Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    29   4.5  
01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151     28   5.9  

>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 56  ADNLDVKKTLTKQ--VKDGSSYGEKNSIQQCLHICWSCTENIYKKC 187
           AD+LD      ++  V D ++  EK + +   HI   CTE I +KC
Sbjct: 187 ADDLDAMWVCLRENCVIDDATGAEKMNYEDFCHIATVCTEQIGQKC 232


>01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151
          Length = 555

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 231 LPTEGEITSQCSCLNRLIFIRTWLWRIGCIRTWTSQIIM 347
           L  +G  +S C C NR++ + T++ R  C    T+ I M
Sbjct: 258 LDEQGSDSSACPCSNRIMALITFVHRSSCPLRTTTMITM 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,451,183
Number of Sequences: 37544
Number of extensions: 394447
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)