Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58387| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_13702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_58387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 424 WNIRLQPRILMSSNNHTWLISPHHHNMMICEVHVLIQPILQSQVRINISRLR 269
           W I LQ  IL+    HT+ +     +  I ++   + P+   +  +N++RL+
Sbjct: 100 WMIALQGNILLIKCRHTYCVDDRLTSFKILDLKAALSPVYFRRSDVNLNRLK 151


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 412 LQPRILMSSNNHTWLISPHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 260
           L P    S  +H     PHHH+  I  +H++I     S   I++S+  H H
Sbjct: 508 LSPSTSSSQRHHH---HPHHHHSAIITIHIII--TAPSPPSISLSQRHHHH 553



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 361 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 260
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 164 PHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 195



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 361 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 260
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 326 PHHHHSAITTIHIII--TAPSSPSISSSQRNHHH 357



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 361 PHHHNMMICEVHVLIQPILQSQVRINISRLRHEH 260
           PHHH+  I  +H++I     S   I+ S+  H H
Sbjct: 392 PHHHHSAITTIHIII--TAPSSPSISSSQRHHHH 423


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 237 LEALSPFLMRPLCWMPQHFLYMFSVQDQQMCKHC 136
           L  L  + +RP+ W+ Q+F +   +Q  Q   HC
Sbjct: 240 LRFLRIWAIRPIYWLVQYFFFKTPIQGAQTTIHC 273


>SB_13702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 518 AKNVYSDFLGHDKQYHHHCY 459
           A  V +D +GHD  YHHHC+
Sbjct: 137 ASIVEADGMGHD-YYHHHCH 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,185,173
Number of Sequences: 59808
Number of extensions: 455428
Number of successful extensions: 1262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)