Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical pr...   100   8e-22
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine re...    29   4.0  

>Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical
           protein C45G3.3 protein.
          Length = 289

 Score =  100 bits (240), Expect = 8e-22
 Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 245 GDHQSVFMSQSTDIYTNLALEDWLYKNMDFT-NHHVMMVWRNEPCVVIGRHQNPWLEANV 421
           G   +V  S S+ I+ NLA E+ +++  +   N  ++++W N P VVIGRHQNPW+E N+
Sbjct: 7   GKLSTVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQNPWIEVNI 66

Query: 422 PLLSEKEIALARRNSGGGTVYHDRGNLNIHSL 517
           P  ++  I + RR+SGGGTVYHD GNLNI  L
Sbjct: 67  PYANKNNIQIVRRHSGGGTVYHDLGNLNISLL 98



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 538 RNYNLKLIKRALFRSFGIKSTINERQDLIVR-DKYKVSGNSCKV 666
           R  NLK I  AL + F +K   N+R D+ +   + K SG + ++
Sbjct: 106 RPKNLKFISDALNQQFSVKIVPNKRDDMELHPGERKCSGTAARI 149


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +2

Query: 245 GDHQSVF-MSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWL-EAN 418
           GD + V+ +S  +DIY +L++++ + K+++F +  + +    E   VI    NP+L +A 
Sbjct: 365 GDEEYVYKLSYVSDIYGSLSIKNTILKDLNFLSRLMYIALLEENRYVIQIISNPFLYKAR 424

Query: 419 VPLLS 433
           +P++S
Sbjct: 425 LPMIS 429


>AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine
           receptor, class i protein36 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 23  IFCKTLIFY*CADNLDVKKTLTKQVKDGSSYGEKNSIQQCL-HICWSCTENIYKKCCGIQ 199
           +FC T++ Y   D L + K L  ++   S    KN+++  L H   S    +      I 
Sbjct: 201 LFCGTVLTYTTIDMLKILKKLKMKISSNSYTRYKNAVKSLLAHFYTSLLSILPVTAAMIV 260

Query: 200 QSGRIKKGE----SASN*GGDHQSV 262
              +I+ G+     A+  GG H SV
Sbjct: 261 MYAKIENGQDLVNGAAAIGGLHSSV 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,189
Number of Sequences: 27780
Number of extensions: 347916
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)