Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    30   0.017
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    30   0.017
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          28   0.070
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      28   0.070
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.38 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 196 PAKWPHQKRRECFQL 240
           P KWPH+ +R C+QL
Sbjct: 490 PGKWPHEDKRGCYQL 504


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 196 PAKWPHQKRRECFQL 240
           P KWPH+ +R C+QL
Sbjct: 580 PGKWPHEDKRGCYQL 594


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 326 CSYTTNPPEPSSYKYQSIET*TLTGDLPLSWKHSL 222
           C +T N  EPS   Y+ IET +L  D P ++   +
Sbjct: 564 CFFTMNDLEPSEIFYEKIET-SLNSDKPFTYNERI 597


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 326 CSYTTNPPEPSSYKYQSIET*TLTGDLPLSWKHSL 222
           C +T N  EPS   Y+ IET +L  D P ++   +
Sbjct: 564 CFFTMNDLEPSEIFYEKIET-SLNSDKPFTYNERI 597


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 65  LDVKKTLTKQVKDGSSYGEKNSIQQCLHICWSCTENIYKKCCGIQQ 202
           ++V   L K + D   +     I + LH+  +C EN  K+   +Q+
Sbjct: 67  VEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQK 112


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 488 DRGNLNIHSLPHVRDMTEITI 550
           DR N+  H L  +RD +E  I
Sbjct: 36  DRSNMTFHELKKLRDSSEARI 56


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 669 PNFAAVPRYLVFVSDDKVLTFI 604
           PN  A+P  +    D  +LTF+
Sbjct: 72  PNIIAIPDVVEAAKDADILTFV 93


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 473 GTVYHDRGNLNIHSLPHVRDMTEIT 547
           G V H    LN++ LP++R + ++T
Sbjct: 506 GKVTH-AARLNVYGLPYIRLIPKVT 529


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 473 GTVYHDRGNLNIHSLPHVRDMTEIT 547
           G V H    LN++ LP++R + ++T
Sbjct: 506 GKVTH-AARLNVYGLPYIRLIPKVT 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,565
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)