Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50030.1 68416.m05470 hypothetical protein                          31   0.92 
At2g36710.1 68415.m04504 pectinesterase family protein contains ...    27   8.6  

>At3g50030.1 68416.m05470 hypothetical protein 
          Length = 501

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 119 EKNSIQQCLHICWSCTENIYKKCCGIQQSGRIK 217
           E+  ++  + I  +C +N+YK   G++  GR+K
Sbjct: 167 EEEIVKLAMEIATNCLKNVYKSFLGVEDRGRLK 199


>At2g36710.1 68415.m04504 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 407

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 521 GAKNVYSDFLGHDKQYHHH 465
           GA   YS F GH   +HHH
Sbjct: 39  GALAKYSTFFGHKHHHHHH 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,620
Number of Sequences: 28952
Number of extensions: 317877
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)