Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060765.seq
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 111 6e-26
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 77 2e-15
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 70 3e-13
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 64 2e-11
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 64 2e-11
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 63 3e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 61 1e-10
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 50 2e-07
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 32 0.056
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 3.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.9
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 6.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 8.5
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 111 bits (268), Expect = 6e-26
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = +2
Query: 32 QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 211
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 212 ATIMKLLDIVHPAARLL 262
ATIMKLLDIVHPAA+ L
Sbjct: 67 ATIMKLLDIVHPAAKTL 83
Score = 103 bits (247), Expect = 2e-23
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P TLVDIA++QDAEVGDGTTSVV+ AGE+L+ + FVE+GV ++IR R A++LA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
KIKE A+ +D + RDLL KCAST
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCAST 165
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 471 GTKRSPIEVCINR-MSSKLIXQQKDHFSKIVVDAVL 575
G R + C + M+SKLI F+K+VVDAVL
Sbjct: 153 GKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVL 188
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 77.0 bits (181), Expect = 2e-15
Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Frame = +2
Query: 68 QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIV 241
Q + KPQ V SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 242 HPAARLLWTLQS 277
HPAA++L L +
Sbjct: 72 HPAAKMLVDLSA 83
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/88 (38%), Positives = 55/88 (62%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LVD++ +QD E GDGTTSVVILAG +L + +++G+HP V+ + + A+ +
Sbjct: 73 PAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTV 132
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
+ +KE A+ I+ R+ LL+ A+T
Sbjct: 133 DCMKENALAIE----LSDRESLLRAATT 156
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 69.7 bits (163), Expect = 3e-13
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P +++++A++QD EVGDGTTSV+ILAGEIL P ++ +HP V+IR+ + A A+
Sbjct: 73 PAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDAL 132
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
I E + ++ E L+ C T
Sbjct: 133 SIIDEITLPVNVDDNAEMFRLIRTCIGT 160
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/76 (35%), Positives = 47/76 (61%)
Frame = +2
Query: 29 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 208
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 209 GATIMKLLDIVHPAAR 256
G I++ +++ HPAA+
Sbjct: 61 GHAILREIEVAHPAAK 76
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 64.1 bits (149), Expect = 2e-11
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 438
LV+I+K QD EVGDGTTSV + A E+L++ + V +HP+V+I R A++ AI+ ++
Sbjct: 80 LVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR- 138
Query: 439 QAVKIDNKS-PEEQRDLLLKCAST 507
A IDN S P + R L A T
Sbjct: 139 -ASSIDNSSDPAKFRSDLENIART 161
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDH-NGKAVISNDGATIM 223
+ E Q +G+ +S+ V D V++TLGP+GMDK++ + +G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 224 KLLDIVHPAARLLWTLQSLK 283
K + + + AA++L + ++
Sbjct: 68 KSIALDNAAAKVLVNISKVQ 87
Score = 33.1 bits (72), Expect = 0.032
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 480 RSPIE-VCINRMSSKLIXQQKDHFSKIVVDAVL 575
RS +E + +SSK++ Q K+HF+++ VDAVL
Sbjct: 152 RSDLENIARTTLSSKILSQNKNHFAQLAVDAVL 184
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 63.7 bits (148), Expect = 2e-11
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 223
L REG QG + ++ N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 224 KLLDIVHPAARLL 262
+ L+++HPAA+L+
Sbjct: 73 RELEVIHPAAKLV 85
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P +VD + Q+ E+GD VV+ GE+L + + + G+ P + + A +
Sbjct: 80 PAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTM 139
Query: 424 EKIKE-QAVKIDNKSPEEQ 477
E ++E A KI+ E++
Sbjct: 140 EVLEEICADKIETVESEKE 158
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = +2
Query: 65 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVH 244
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 245 PAARLL 262
PA ++L
Sbjct: 75 PAGKVL 80
Score = 61.7 bits (143), Expect = 8e-11
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LV++A+ QD EVGDGTTSVVI+A E+L+R V+ +HP +I R A R A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 424 E 426
+
Sbjct: 135 K 135
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 477 KRSPIEVCINRMSSKLIXQQKDHFSKIVVDAVL 575
K S I V MSSK+I D FS + VDA+L
Sbjct: 150 KESLINVAKTSMSSKIIGNDSDFFSTMAVDAML 182
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 60.9 bits (141), Expect = 1e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Frame = +2
Query: 53 REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 232
+E + G + S+I A + V + VRT+LGPRG+DK+++ +G+ ++NDGATI+ +
Sbjct: 24 QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83
Query: 233 DIVHPAARLL 262
++ H A+LL
Sbjct: 84 EVEHQIAKLL 93
Score = 58.8 bits (136), Expect = 6e-10
Identities = 28/76 (36%), Positives = 49/76 (64%)
Frame = +1
Query: 259 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 438
LV ++KSQD E+GDGTT VV+LAG +L++ + +++G+HP + A ++A++ +
Sbjct: 93 LVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDA 152
Query: 439 QAVKIDNKSPEEQRDL 486
+ +D SPE +L
Sbjct: 153 ISDVVD-FSPENTTNL 167
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVL 575
+ SK++ + DHF+ I VDAVL
Sbjct: 175 LGSKVVSKAHDHFANIAVDAVL 196
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%)
Frame = +1
Query: 238 RSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 417
++P + A +QD GDGTTSV +L GE+LK+ + ++ EG+HP ++ A
Sbjct: 68 QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNE 127
Query: 418 AIEKIKEQAVKIDNKSPEEQRDLLLKCAST 507
A+ + + K D E R++LL A T
Sbjct: 128 ALTFL--DSFKTDF---EVDREVLLNVAKT 152
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 226
LL + Q L NI+A + D +++ LGP G K++VD G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 227 LLDIVHPAA 253
+ I +P A
Sbjct: 64 EMQIQNPTA 72
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 32.3 bits (70), Expect = 0.056
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +1
Query: 265 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 444
D+A + GDGTT+ +L I V G +P L R ++ A +E + QA
Sbjct: 107 DVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL--QA 164
Query: 445 VKIDNKSPEE 474
K D + EE
Sbjct: 165 NKRDITTSEE 174
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 128 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 238
AV TLGP+G + LI G I+ DG T+ + + +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSL 93
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 361 EEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 495
E+ V +L RA +L I+ QA K DNKS E+R+ L+
Sbjct: 863 EKSVEENILARA---QYKLDIDGKVIQAGKFDNKSTPEEREAFLR 904
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 346 LKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 495
L+ E+ + +L RA +L ++ QA K DNKS E+R+ L+
Sbjct: 1309 LRLITEKSIEENILSRA---QYKLDLDGKVIQAGKFDNKSTPEEREAFLR 1355
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 157 DGQADCRSQWKGGYI 201
DG+ +C S+WK Y+
Sbjct: 555 DGKVECNSKWKSWYV 569
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 334 ILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSP 468
IL++L+PF + V L A+ SRL + + A+ +D P
Sbjct: 936 ILQKLQPFFTQEVFRTALDNAIGCISRLILH--NQNAIPVDQVLP 978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,486
Number of Sequences: 5004
Number of extensions: 48341
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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