Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060765.seq
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 127 8e-30
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 64 1e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 3e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 61 8e-10
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 58 4e-09
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 37 0.014
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.044
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 31 0.95
SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18) 29 3.8
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 5.1
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.1
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 127 bits (306), Expect = 8e-30
Identities = 60/81 (74%), Positives = 69/81 (85%)
Frame = +2
Query: 20 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 199
+S QP I+LL+EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 200 SNDGATIMKLLDIVHPAARLL 262
SNDGATI+ LLDIVHPAA+ L
Sbjct: 694 SNDGATIINLLDIVHPAAKTL 714
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAE 291
P TLVDIAKSQDAE
Sbjct: 709 PAAKTLVDIAKSQDAE 724
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +1
Query: 238 RSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 417
+ P ++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 15 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 74
Query: 418 AIEKIKEQ 441
I+ +K+Q
Sbjct: 75 MIDILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +1
Query: 238 RSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 417
+ P ++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 212 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 271
Query: 418 AIEKIKEQ 441
I+ +K+Q
Sbjct: 272 MIDILKQQ 279
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +1
Query: 232 GYRSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTAS 411
G +P LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++ R +
Sbjct: 72 GIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSV 131
Query: 412 RLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 507
+ A EK E A + PE+ R+ L+ A T
Sbjct: 132 K-AAEKALEAAAVDHSSDPEKFREDLMNIART 162
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 41 ILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLI--VDHNGKAVISNDGA 214
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 215 TIMKLLDIVHPAARLLWTLQSLK 283
TI+K + I +PAA++L L ++
Sbjct: 66 TILKSIGIDNPAAKILVELSKVQ 88
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVL 575
+SSK++ Q +DHF+K+ VDAVL
Sbjct: 164 LSSKILVQHRDHFAKLAVDAVL 185
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +2
Query: 80 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIV 241
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D V
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 60.9 bits (141), Expect = 8e-10
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +1
Query: 268 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 447
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 448 KIDNKSPEEQRDLLLKCAST 507
+ PE+ RD L+ A T
Sbjct: 61 VDHSSDPEKFRDDLMNIART 80
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVL 575
+SSK++ Q +DHF+K+ VDAVL
Sbjct: 82 LSSKILVQHRDHFAKLAVDAVL 103
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +1
Query: 268 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 447
+A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A + A+E ++E V
Sbjct: 182 VATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKALEVLEE--V 239
Query: 448 KIDNKSPEEQRDLLLKCAST 507
K+ S E RD L+ A T
Sbjct: 240 KV---SREMDRDTLINVAKT 256
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/56 (41%), Positives = 42/56 (75%)
Frame = +2
Query: 95 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 262
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H A+L+
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLM 89
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 438
+V+++KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E +
Sbjct: 89 MVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDS 148
Query: 439 QAVKIDN-KSPEEQRDLLLKCAST 507
A DN ++ ++ L++ A T
Sbjct: 149 IA---DNFPVDKDNKESLIQTAMT 169
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 262
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P R++
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMI 59
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 471 GTKRSPIEVCI-NRMSSKLIXQQKDHFSKIVVDAVLVFGTL 590
G R +E C +SSKLI QK+ F+K+VVDAV++ L
Sbjct: 18 GEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDEL 58
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 418 AIEKIKEQAVKIDNKSPEEQRDLLLKCAST 507
AI++IKE AV + E R LL +CA+T
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAAT 30
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 238
+ DAV TLGP+G + +I G I+ DG T+ K +++
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIEL 118
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 265 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 381
D+A + + E GDGTT+ +LA I V +G +P+
Sbjct: 132 DVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 328 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 441
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVL 575
+SSKLI QQ D F+ ++VDAV+
Sbjct: 21 LSSKLIGQQGDFFANMIVDAVM 42
>SB_33424| Best HMM Match : zf-B_box (HMM E-Value=2.2e-18)
Length = 270
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 408 RCSDCSDQNTRVNTFFNKRLQPLQNFT--SQYHYRGGSIANLSVLRLCNVHK 259
RC++C +KRLQPLQ+ T S + G + +S C HK
Sbjct: 48 RCNECDHFVCEQCISAHKRLQPLQHHTILSLDEIKSGKLLAMSKTPYCTKHK 99
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 28.3 bits (60), Expect = 5.1
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 6/143 (4%)
Frame = +1
Query: 94 LQHQCLSTCRRCGQNHPGSPWDGQADCRSQWKGGYIKR-WCNNHEVTGYRSPCR*TLV-- 264
+Q C TC CG P R+ W + +C+ V +S R +
Sbjct: 769 MQFNCRKTCGMCGTRKSLKPAMPVCKDRTSWCRKWASYGYCHTKAVYMLKSCKRSCGICE 828
Query: 265 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 444
D + S+ VGD + + V + V P + + R A R+ K +
Sbjct: 829 DPSGSKATPVGDPSLPCEDKHKSCVYWASIGVCD-VRPTYMYKHCRLACRVCTPVKKHEG 887
Query: 445 VKIDNKSPEEQRD---LLLKCAS 504
DNK P+E+ D L KCAS
Sbjct: 888 PPCDNKDPDEECDHWAKLGKCAS 910
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 106 CLSTCRRCGQNHPGSPWDGQADCRSQWKGGYIKRWC 213
C TC C N SP+ GQ +C S + G ++ C
Sbjct: 142 CQGTCD-CKNNATCSPFTGQCNCTSGFTGDRCEKQC 176
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 408 RCSDCSDQNTRVNTFFNKRLQPLQNFTSQYHY 313
R S+ ++QNT V+ +N +QP N+ S+Y Y
Sbjct: 209 RISEFANQNTLVS-IYNAIIQPHLNYCSEYEY 239
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 88 ARLQHQCLSTCRRCGQN--HPGSPWDGQADCRSQWK 189
+RLQH+C++ C CG++ P P + D R WK
Sbjct: 412 SRLQHKCVNLCYGCGESDCSPLVP-PPEQDHRWDWK 446
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 80 KPQLVSNINACQLVVDAVRTTLGPRGMD 163
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,605
Number of Sequences: 59808
Number of extensions: 393480
Number of successful extensions: 1129
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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