Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060765.seq
         (602 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   3.3  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   4.4  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   4.4  
AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    23   7.6  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 313 PRWFHRQPQRLETLQCPQESSGRVNDIQ*LHDCCTIV*YNR-LSIVIYNQL 164
           PR+    P RLE     +E +G +N IQ  H   T + Y R L +V   QL
Sbjct: 347 PRYIKIDPDRLEVFSTVKEITGFIN-IQAHHPNFTTLNYFRNLEVVGGRQL 396


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 35  PQILLLREGTDQTQGKPQLVSNINACQLVVDAVRT 139
           P I LLR+  +QT+ + Q  S++    L     RT
Sbjct: 354 PLIALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRT 388


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 363 FNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHK 259
           +NK ++P+QN T +   R G    L+ ++L NV++
Sbjct: 38  YNKLIRPVQNMTQKVDVRFG----LAFVQLINVNE 68


>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 457 NKSPEEQRDLLLKCASTGC 513
           + SPE   D L KC+ T C
Sbjct: 141 SSSPEPNLDCLSKCSPTKC 159


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,632
Number of Sequences: 2352
Number of extensions: 12447
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58450473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)