Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060765.seq
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 129 2e-30
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 75 3e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 73 2e-13
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 72 3e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 69 3e-12
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 68 6e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 61 6e-10
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 61 6e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 52 3e-07
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 52 3e-07
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.016
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.063
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.063
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.063
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.083
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.083
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.11
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.11
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.15
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.15
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 31 0.44
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.0
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 2.4
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.1
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 28 4.1
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 129 bits (311), Expect = 2e-30
Identities = 62/81 (76%), Positives = 68/81 (83%)
Frame = +2
Query: 20 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 199
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 200 SNDGATIMKLLDIVHPAARLL 262
SNDGATIMKLLDIVHPAA++L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 115 bits (277), Expect = 2e-26
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
K+KE AV I+ KS EE++ LL KCA+T
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCAAT 164
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVLVFG 584
+SSKLI +K+ F+ +VVDAV+ G
Sbjct: 166 LSSKLIGGEKEFFATMVVDAVMAIG 190
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +2
Query: 65 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVH 244
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 245 PAARLLWTLQSLK 283
PAA++L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 64.5 bits (150), Expect = 5e-11
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
+ I+E K+ K + + L+ CA T
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKT 157
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 510 MSSKLIXQQKDHFSKIVVDAVL 575
MSSKLI D F+ +VV+AVL
Sbjct: 159 MSSKLISGDSDFFANLVVEAVL 180
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/56 (53%), Positives = 46/56 (82%)
Frame = +2
Query: 95 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 262
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAA++L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
+ + AV ++ RD L+K AST
Sbjct: 142 DILTAMAVPVE----LTDRDSLVKSAST 165
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 71.7 bits (168), Expect = 3e-13
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +1
Query: 241 SPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 420
+P LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 421 IEKIKEQAVKIDNK-SPEEQRDLLLKCAST 507
+ ++ IDNK + E+ R LLK A T
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLKIAMT 160
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +2
Query: 47 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 220
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 221 MKLLDIVHPAARLL 262
+K L I +PAA++L
Sbjct: 66 LKSLHIDNPAAKVL 79
Score = 30.7 bits (66), Expect = 0.78
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 489 IEVCINRMSSKLIXQQKDHFSKIVVDAV 572
+++ + + SK++ Q K+HF+++ VDAV
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDAV 182
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +2
Query: 29 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 199
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 200 SNDGATIMKLLDIVHPAARLL 262
+ND ATI+ L+I HPAA+LL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 424 EKIKEQAVKIDNKS 465
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 67.7 bits (158), Expect = 6e-12
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 29 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 208
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 209 GATIMKLLDIVHPAAR 256
G I++ LD+ HPAA+
Sbjct: 61 GNAILRELDVAHPAAK 76
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/88 (36%), Positives = 53/88 (60%)
Frame = +1
Query: 244 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 423
P ++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 424 EKIKEQAVKIDNKSPEEQRDLLLKCAST 507
+ + A+ ID + L+ C T
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSCIGT 160
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 60.9 bits (141), Expect = 6e-10
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = +1
Query: 259 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 438
+V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++
Sbjct: 11 MVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLER 70
Query: 439 QAVKID 456
A K +
Sbjct: 71 IAQKFE 76
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 60.9 bits (141), Expect = 6e-10
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = +1
Query: 259 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 438
+V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++
Sbjct: 87 MVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLER 146
Query: 439 QAVKID 456
A K +
Sbjct: 147 IAQKFE 152
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +2
Query: 44 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 217
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 218 IMKLLDIVHPAARLL 262
I++ +D+ + A+L+
Sbjct: 73 ILEQMDVDNQIAKLM 87
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 238 RSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 417
++P + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 418 AIE 426
++
Sbjct: 129 TLQ 131
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 262
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 238 RSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 417
++P + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 418 AIE 426
++
Sbjct: 129 TLQ 131
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +2
Query: 101 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARLL 262
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 265 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 444
++A + GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 120 EVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 238
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.063
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 238
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 256 TLV-DIAKSQDAEVGDGTTSVVILAGEILK 342
TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 103 TLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.063
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 271 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 450
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 451 IDN 459
+++
Sbjct: 193 VED 195
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 259
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.063
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 271 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 450
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 451 IDN 459
+++
Sbjct: 193 VED 195
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 259
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +1
Query: 271 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 450
+K+ D GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + +
Sbjct: 130 SKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKE 188
Query: 451 IDN 459
+++
Sbjct: 189 VED 191
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 259
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.083
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 235
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 235
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 226
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +1
Query: 268 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 447
+A + + GDGTT +L IL V GV+ L + A + +K +AV
Sbjct: 107 VASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAV 166
Query: 448 KIDNKSPEE 474
I +PEE
Sbjct: 167 MI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 119 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHPAARL 259
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 271 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 450
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 451 IDN 459
+++
Sbjct: 189 VED 191
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 116 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHP 247
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +1
Query: 271 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 450
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 451 IDN 459
I++
Sbjct: 177 IED 179
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 354 RLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLAAG*TISSNFMIVAP 208
+L+ + F Y+ GS+A ++L C HK++A ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 44 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 166
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 405 CSDCSDQNTRVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRL-CNVHKSLAAG 244
C D + +N+F NK+ P + Q Y G + L VL CN L G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 337 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 477
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 361 QQTASTSSEFH-QPISLPRWFHRQPQRLETLQCP 263
Q TA+TSS QP+ P F QPQ L+ LQ P
Sbjct: 409 QNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQPP 442
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,585
Number of Sequences: 28952
Number of extensions: 271628
Number of successful extensions: 826
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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