Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060764.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   4.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.7  

>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 538 NSSQNCXTQASSFQIEDCTEAQKDW----D*GTKKSSETVYKALKGS 666
           NSSQ   TQ +    +D  EA+++W    D G    SE+     +GS
Sbjct: 474 NSSQKVATQQTEGSDQDGEEAEEEWHGISDDGKADESESTKPVAEGS 520


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 79  LLPVSFPRVWTRRTRISRVA 20
           ++P+ FPR W+   + S+VA
Sbjct: 170 IIPLFFPRAWSPTVKFSKVA 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,841
Number of Sequences: 5004
Number of extensions: 12181
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)