Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060763.seq
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.17 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   3.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.7  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   3.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 132 TTRRKHRSAPYRLHRPHLPSAHVSEPP 212
           TT + +R++PY + RP   SA +S PP
Sbjct: 258 TTLKNNRASPYPMQRP--KSASLSPPP 282


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 210 GARTRERKANAAGVVCKARYDVFSSSSCSVTR*GQAVRPAR 88
           G R R R  N+   VC A+  +       +   G+ V P R
Sbjct: 341 GRRYRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHPVR 381



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 78  PXSTHSLWRHC 46
           P +T+++W HC
Sbjct: 142 PNATNTVWSHC 152


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 210 GARTRERKANAAGVVCKARYDVFSSSSCSVTR*GQAVRPAR 88
           G R R R  N+   VC A+  +       +   G+ V P R
Sbjct: 341 GRRYRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHPVR 381



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 78  PXSTHSLWRHC 46
           P +T+++W HC
Sbjct: 142 PNATNTVWSHC 152


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 124 RARRRGENIVARLTDYTGRICLPLTCPSPRLSLXELT 234
           RARR G  +  R+       C+P      RL   E++
Sbjct: 337 RARRTGRKVSPRVNTIKHTSCIPTPNGDSRLPPLEIS 373


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 183 LPSAHVSEPPTEPXGT 230
           LP      PPT+P GT
Sbjct: 544 LPMQQSQNPPTKPYGT 559



 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 225 GTHISRLYPXCWRLXLK 275
           G H+   YP CW+   K
Sbjct: 751 GLHLDWNYPVCWQSNCK 767


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 124 RARRRGENIVARLTDYTGRICLPLTCPSPRLSLXELT 234
           RARR G  +  R+       C+P      RL   E++
Sbjct: 337 RARRTGRKVSPRVNTIKHTSCIPTPNGDSRLPPLEIS 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,437
Number of Sequences: 336
Number of extensions: 2234
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)