Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060763.seq
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.18 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    26   2.9  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   5.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.8  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 432  PRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRT 283
            PR  K  +Q  KQV+    PAS   P +SSN+ + S   +   A   S++
Sbjct: 1260 PRPTKRQRQIMKQVAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKS 1309


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/111 (18%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = -2

Query: 390 SVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFXEAQS 211
           +  +  +S+P  + ++    PS+   + ++   S + S S  S++   ++S      + S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194

Query: 210 GARTRERKANAAGV-VCKARYDVFSSSSCSVTR*GQAVRPARTTXPXSTHS 61
            + +    ++++ V +  +     SSSS S +    + RP+ ++   +T S
Sbjct: 195 SSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMS 245


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = -2

Query: 354 NRSSN---QLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFXEAQSGARTRERKA 184
           NR  N   +L PST E +      S+  SLS IS N        E    +  A  +E  A
Sbjct: 481 NRGGNKHLELYPSTAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESA 540


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 70  GLRXCCPGGTNGLALPSYRA-RRRGEN 147
           G R C  GG NGL L  Y+  R RG +
Sbjct: 265 GERGCLMGGINGLFLAQYQVLRERGHS 291


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -2

Query: 390 SVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFXEAQS 211
           S D + +     N+++N++     + +   +PL    S    +A   +TA R  F     
Sbjct: 573 SSDPDTSVKSITNKATNEITTLKSDDSAKMQPLDVLASKRYNNAFSTETAERKTFLSYVF 632

Query: 210 GARTRERKA 184
           GA    RKA
Sbjct: 633 GANNATRKA 641


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 129 TTTRRKHRSAPYRLHRPHLPSAHVSEP 209
           T T    R A  R+HRP+ P   + EP
Sbjct: 43  TQTEANSRLASQRVHRPNSPHLTIYEP 69


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 105 LGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHIS 239
           +G   LP+ T+ +  R     LHR   PS     P   P  +H+S
Sbjct: 325 VGSVPLPAPTSSQSLRLGS--LHRSRSPSPRSGRPRRSPSPSHLS 367


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/63 (17%), Positives = 22/63 (34%)
 Frame = -2

Query: 354 NRSSNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFXEAQSGARTRERKANAA 175
           N    +   +     C   P      ++ +       +S C+F E+Q     RE+   + 
Sbjct: 226 NEGETEEEKAKTSNVCVCIPCKSAEQITDLKGQATGDSSPCDFEESQPRINGREKLRRSV 285

Query: 174 GVV 166
            V+
Sbjct: 286 KVI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,054
Number of Sequences: 5004
Number of extensions: 34955
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)