Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060763.seq
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367... 31 0.55
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 31 0.55
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 29 1.7
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 29 1.7
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 3.0
09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730 28 5.2
03_02_0930 - 12480983-12481888 28 5.2
02_03_0130 + 15567200-15567562 28 5.2
12_02_0249 + 16427590-16428975,16428990-16429082 27 6.8
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222... 27 6.8
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 6.8
08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311 27 9.0
04_04_0323 - 24392043-24393021,24393135-24393544 27 9.0
>03_05_0165 +
21435948-21436144,21436234-21436318,21436690-21436768,
21436892-21437005,21437249-21437361,21437570-21437677,
21437760-21437879
Length = 271
Score = 31.1 bits (67), Expect = 0.55
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -2
Query: 246 TASRCEFXEAQSGA--RTRERKANAAGVVCKARYDVFSSSSCSVTR*GQAVRPARTTXP 76
T S C GA R R A+AA + C SSSS V R G A PA T P
Sbjct: 3 TLSSCSRLSTGGGAVQRRPRRPASAATITCHRSSS--SSSSARVVRTGAAAAPAAATAP 59
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 31.1 bits (67), Expect = 0.55
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -2
Query: 381 AEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEF 226
A P TP P R QLR ST +CAA R LS L R +F
Sbjct: 13 ASPLHTPLPARPRPQLRLST-STSCAAMKSYRLSELSDAEVGGLKARPRIDF 63
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 124 RARRRGENIVARLTDYTGRICLPLTCPSPRLSLXELTSRGCIQXVGAYX*KTTGARQGPS 303
+ R +NI A L D TGR CL + S + L +L + CI + PS
Sbjct: 220 KLRGHTDNIRALLLDPTGRYCLSGSSDS-MIRLWDLGQQRCIHSYAVHTDSVWALASTPS 278
Query: 304 CTSLFARGGTQLI 342
+ +++ G Q +
Sbjct: 279 FSHVYSGGRDQSV 291
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISAN 256
+PRL+ R++ EP STP R N++ + T AA R +LS ++
Sbjct: 160 SPRLSSSNPDARRRAPPQPEPPSTP---RKENRVPSAAAASTAAATATPRLRALSRSRSS 216
Query: 255 XLDTAS 238
++AS
Sbjct: 217 LKESAS 222
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISAN 256
T A Q + + A P+P +N+ RPS+ A R R+ S ++
Sbjct: 35 TSASASAAMQMQAATTTTAARRLAPKPQPQANRCRPSSVSVVAAGRSRRRSARSSLRASA 94
Query: 255 XLD--TASRCEFXEAQSGARTRERKANAA 175
LD R +SG TR N A
Sbjct: 95 SLDQEVKERASPAAGKSGQATRRDVRNIA 123
>09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730
Length = 246
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 423 AKDVKQYRKQVSVDAEPAST-PRPNRSSNQLRPSTREQTCAARPLS--RTGSLSXISANX 253
AK ++ + D++ T PR NR+ + R S+RE T P + ++GS +AN
Sbjct: 61 AKPAQEPSADAAQDSKRTQTAPRLNRAIPKFRASSRESTADEEPSTGCQSGSTGEPTANE 120
Query: 252 LDTA 241
TA
Sbjct: 121 EPTA 124
>03_02_0930 - 12480983-12481888
Length = 301
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 414 VKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARP 295
+++ RK+ S A PAST RP+ +S + R+ AA P
Sbjct: 18 LRRRRKKKSKRASPASTARPSDASAVPPAAPRQPPAAAAP 57
>02_03_0130 + 15567200-15567562
Length = 120
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 190 PLTCPSPRLSLXELTSRG 243
PL CPSP + LTSRG
Sbjct: 60 PLLCPSPAMQSARLTSRG 77
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 136 RGENIVARLTDYTGRICLPLTCPSPRLSLXELTSRG 243
RG +V R +++G++C P+T + + TS+G
Sbjct: 129 RGGFVVLRTGEFSGKVCNPMTGYVRAIDMPRKTSKG 164
>09_04_0720 -
19720844-19720975,19721582-19721809,19722108-19722290,
19722361-19722476,19722684-19722836,19722977-19723120,
19723257-19723380,19723548-19724479,19725245-19725422
Length = 729
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 466 F*VTNTCNFXYSTSS*GCKTVQEAGLRRCR 377
F VT C+ + + CKT++ LRRCR
Sbjct: 265 FGVTRRCSDAATGEALACKTIRRKRLRRCR 294
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 159 PYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGA 299
P+ H+P LP+ + P P ++ L P WR L RC A
Sbjct: 69 PHSQHQPLLPTRRQQQQPPPPYQALVASLAP-LWREGLFLVRCSVFA 114
>08_01_0644 - 5570123-5570453,5571078-5571242,5571899-5572311
Length = 302
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 103 GLALPSYRARRRGENIVARLTDYTGRICLP 192
GLA S+RA R E + R D G CLP
Sbjct: 64 GLACQSWRAAARDEPALWRRIDMRGFACLP 93
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -2
Query: 390 SVDAEPASTPRPNRSSNQLRPSTRE-----QTCAARPLSRTGSLSXISANXLDTASRCEF 226
S+ P S+P PNR+ + +P A +P + S S S + +AS
Sbjct: 201 SMPEPPPSSPSPNRAKGKRQPGAASCFPFCSVGATKPAASADSPSPTSTSRTASAS---- 256
Query: 225 XEAQSGARTRERKANAAGVVCKARYDVF 142
+ S T + AAGV A+ + F
Sbjct: 257 SSSSSSTATTASSSTAAGVRSPAKSNSF 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,157,021
Number of Sequences: 37544
Number of extensions: 296852
Number of successful extensions: 889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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