Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060763.seq
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 41 5e-04
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3) 33 0.14
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5) 33 0.19
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 33 0.19
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6) 31 0.57
SB_49703| Best HMM Match : PAN (HMM E-Value=0.015) 29 1.7
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_37918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 28 5.3
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042) 27 7.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 27 7.0
SB_55475| Best HMM Match : VQ (HMM E-Value=2) 27 7.0
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 9.3
SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1) 27 9.3
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +2
Query: 257 LALXFERLPVRDRGRAAQVCSRVEGRS*XEDLFGRGVEAGSASTETCFLYCFTSLARRGV 436
LAL F L VRD+GR AQVC++ + + RGV+A + F SLA+RG+
Sbjct: 17 LALIFAYLSVRDKGRVAQVCTKWRDAA-YSRIVWRGVQA-RLHLRRSNPFLFPSLAKRGI 74
Query: 437 XKI 445
KI
Sbjct: 75 RKI 77
>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
Length = 347
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 LSWRDERLGLTELPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPXGT 230
LSWRD L + ST + + S R RP +LP HVS+ P GT
Sbjct: 101 LSWRDYEYALRPI-STLQQPPNPSQSRRRRRPEYLPQPHVSQAQLSPGGT 149
>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
Length = 665
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 LSWRDERLGLTELPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPXGT 230
LSWRD L + ST + + R+ RP +LP HVS+ P GT
Sbjct: 101 LSWRDYEYALRPI-STLQQPPNPPQSRRIRRPEYLPQPHVSQAQLSPGGT 149
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 LSWRDERLGLTELPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPXGT 230
LSWRD L + ST + + R+ RP +LP HVS+ P GT
Sbjct: 232 LSWRDYEYALRPI-STLQQPPNPPQSRRIRRPEYLPQPHVSQAQLSPGGT 280
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAA 301
TP AK+V + +K S +P+ RP+ + Q RP T +C A
Sbjct: 966 TPFSAKEVNRGKKPTSKAKKPSKRKRPSLKTVQKRPKTVPWSCVA 1010
>SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)
Length = 401
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 LSWRDERLGLTELPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPXGT 230
LSWRD L + ST + + R RP +LP HVS+ P GT
Sbjct: 17 LSWRDYEYALRPI-STLQQPPNPPQSRRRRRPEYLPQPHVSQAQLSPGGT 65
>SB_49703| Best HMM Match : PAN (HMM E-Value=0.015)
Length = 172
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 86 VLAGRTAWPYRVTEHDDEEKTS*RALQTTPA 178
VLAGR + RVT H + E + AL+ TPA
Sbjct: 136 VLAGRVSMEGRVTHHTETETSDALALRYTPA 166
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 84 LSWRDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTH 233
LSWRD L + + + R + +LP +V+ + P GTH
Sbjct: 114 LSWRDYEYALRPISTLKQPPNPPQSRRRRRQEYLPQPYVTPAQSSPGGTH 163
>SB_37918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 158 ALQTTPAAFAFRSR-VRAPD 214
AL+TTP AFA RS RAPD
Sbjct: 16 ALETTPCAFALRSTGTRAPD 35
>SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 292 QGPSCTSLFARGG--TQLIXRSVWAWRRSRLCI 384
+G +SL ARG + LI R W+W R C+
Sbjct: 162 RGSPTSSLIARGSPTSSLIARGTWSWYPCRRCL 194
>SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 159 PYRLHRPHLPSAHVSEPPTEPXG 227
PY H LP+ H+++PPT G
Sbjct: 23 PYHQHARALPACHMAKPPTGSEG 45
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/93 (22%), Positives = 34/93 (36%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISAN 256
TP+ + D + + S DA TP+ + + ++ P T P + T
Sbjct: 1460 TPKASTDAAKVTPKASTDAAKV-TPKASADTAKVTPKASTDTAKVTPKASTDPAKVTPKA 1518
Query: 255 XLDTASRCEFXEAQSGARTRERKANAAGVVCKA 157
DTA + T + +AA V KA
Sbjct: 1519 STDTAKVTPKASTDAPKVTPKASTDAAKVTPKA 1551
>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
Length = 440
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 411 KQYRKQVSVDAEPASTPRPNRSSNQLRPS--TREQTCAARPLSRTGSLS 271
K + ++ EP + +P+R++ Q +PS E A PL +T + S
Sbjct: 325 KDTKDDEPMEIEPPNVTKPDRTTEQTQPSPPPPETVTTAPPLHKTSAFS 373
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2
Query: 408 QYRKQVSVDAE-PASTPRPNRSSN-QLRPSTREQTCAARPLS 289
++ K V V P P P+R+++ ++ PSTR++T + RP++
Sbjct: 1926 RFTKSVPVRTSFPTWNPVPSRTADPKISPSTRKRTLSKRPVN 1967
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +3
Query: 123 PSTTTRRKHRSAPYRLHRPHLPSAHVS-----EPPTEPXGTH 233
P+ T R H HRPH+ S +P P GTH
Sbjct: 157 PTWTPHRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPHGTH 198
>SB_55475| Best HMM Match : VQ (HMM E-Value=2)
Length = 489
Score = 27.5 bits (58), Expect = 7.0
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +3
Query: 93 RDERLGLTELPSTTTRRKHRSAPY-RLHRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLX 269
R RL L++ T ++H Y HR HL T H YP RL
Sbjct: 317 RTHRLRLSKNTQATLIQEHTGYAYPSTHRLHLSK----NTQTSLIQVHTGYAYPSTHRLH 372
Query: 270 LKDYRCETGAELHK 311
L Y T ++HK
Sbjct: 373 LSKYTQATLIQVHK 386
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 99 ERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGT 230
+ L L + +T R APY H P PSA + P T+ GT
Sbjct: 226 QSLSLPQRSDSTEGLSVRPAPYS-HLPPCPSAALRTPDTKEEGT 268
>SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 158 ALQTTPAAFAFRSR-VRAPD 214
AL+TTP AFA RS RAPD
Sbjct: 27 ALETTPCAFALRSTGSRAPD 46
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -2
Query: 402 RKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFX 223
R++ + E TPR +N+L + + + +P +TGS + + N S+ +
Sbjct: 35 RQKQEQNKENGETPRQEVPANRLIKTPLSRRESTKPTEKTGSQTPGNRNTRQLVSKSD-- 92
Query: 222 EAQSGARTRERKAN 181
+ Q+ T +RKA+
Sbjct: 93 KGQTIRNTSKRKAS 106
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 159 PYRLHRPHLPSAHVSEPPT 215
P+ LHR HLP + PPT
Sbjct: 30 PHPLHRHHLPPPATASPPT 48
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 159 PYRLHRPHLPSAHVSEPPTEPXGTHISRLYP 251
P +H P + + P P G +SR YP
Sbjct: 155 PLEIHSPGITPLGIHSPGITPLGNSLSRYYP 185
>SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1)
Length = 708
Score = 27.1 bits (57), Expect = 9.3
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 102 RLGLTELPSTTTRRKHRSAPY-RLHRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLXLKD 278
RL L++ T + H Y LHR HL S + + HI YP RL L
Sbjct: 520 RLRLSKNKQATLIQVHTGYAYPSLHRLHL-SKYTQATLIQ---VHIGYAYPRSHRLRLSK 575
Query: 279 YRCETGAELHK 311
Y T ++HK
Sbjct: 576 YTQATLIQVHK 586
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 111 LTELPSTTTRRKHRSAPYRLHRPHLPSAHV 200
+T PS T + A LHRP +PS+H+
Sbjct: 343 ITTQPSLTIVHNYHPAISYLHRPPVPSSHL 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,825
Number of Sequences: 59808
Number of extensions: 329475
Number of successful extensions: 1104
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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