Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060763.seq
(520 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC028132-1|AAH28132.1| 418|Homo sapiens F-box and leucine-rich ... 36 0.064
AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens ... 34 0.34
BC033818-1|AAH33818.1| 204|Homo sapiens V-set and transmembrane... 32 1.0
AL109964-4|CAI42205.1| 204|Homo sapiens chromosome 20 open read... 32 1.0
AL109964-3|CAI42206.2| 149|Homo sapiens chromosome 20 open read... 32 1.0
AK056177-1|BAB71113.1| 204|Homo sapiens protein ( Homo sapiens ... 32 1.0
AK131011-1|BAC85476.1| 134|Homo sapiens protein ( Homo sapiens ... 30 4.2
AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens ... 30 4.2
BX248516-5|CAM25876.1| 245|Homo sapiens HLA-B associated transc... 30 5.6
AL662847-22|CAO72085.1| 245|Homo sapiens HLA-B associated trans... 30 5.6
AL662801-5|CAM25576.1| 245|Homo sapiens HLA-B associated transc... 30 5.6
U44378-1|AAA91041.1| 552|Homo sapiens Dpc4 protein. 29 7.4
BC002379-1|AAH02379.1| 552|Homo sapiens SMAD family member 4 pr... 29 7.4
AF045447-1|AAC03051.1| 552|Homo sapiens deleted in pancreatic c... 29 7.4
AB043547-1|BAB40977.1| 436|Homo sapiens SMAD4 protein. 29 7.4
BC063688-1|AAH63688.2| 385|Homo sapiens family with sequence si... 29 9.8
BC011716-1|AAH11716.2| 301|Homo sapiens FAM54A protein protein. 29 9.8
AL138828-2|CAI95285.1| 264|Homo sapiens family with sequence si... 29 9.8
AL138828-1|CAI95284.1| 379|Homo sapiens family with sequence si... 29 9.8
AL121713-3|CAI17909.1| 264|Homo sapiens family with sequence si... 29 9.8
AL121713-2|CAI17908.1| 379|Homo sapiens family with sequence si... 29 9.8
AK126859-1|BAC86725.1| 131|Homo sapiens protein ( Homo sapiens ... 29 9.8
AK125758-1|BAC86277.1| 342|Homo sapiens protein ( Homo sapiens ... 29 9.8
>BC028132-1|AAH28132.1| 418|Homo sapiens F-box and leucine-rich
repeat protein 14 protein.
Length = 418
Score = 36.3 bits (80), Expect = 0.064
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 257 LALXFERLPVRDRGRAAQVCSRVEGRS*XEDLFGRGVEAGSASTETCFLYCFTSLARRGV 436
LA+ F L VRD+GRAAQVC+ + + ++ RGVEA F SL RG+
Sbjct: 13 LAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVW-RGVEA-KLHLRRANPSLFPSLQARGI 70
Query: 437 XKI 445
++
Sbjct: 71 RRV 73
>AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens
cDNA FLJ46594 fis, clone THYMU3045692. ).
Length = 368
Score = 33.9 bits (74), Expect = 0.34
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 186 PSAHVSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGAELHKFVRAWRDAADXKICLGVA 365
PS HVS P+ H S ++P + +H F+ W A+ ++C+
Sbjct: 43 PSTHVSIHPSIHPCIHAS-IHPSIHPSVHPSMYPFIHSYIHPFIHPWIHASSIRLCMNAC 101
Query: 366 *KPALHLRRPASCTVLHP 419
P++H P C+ +HP
Sbjct: 102 MHPSIH---PFICSSIHP 116
>BC033818-1|AAH33818.1| 204|Homo sapiens V-set and transmembrane
domain containing 2 like protein.
Length = 204
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 160 GALRCFLLVVVLGNSVRPSRSSRQDNIXXVHALIVATLHTLTXHDASD 17
GAL L + LG + RP+ + DN HAL T H +T D
Sbjct: 10 GALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGED 57
>AL109964-4|CAI42205.1| 204|Homo sapiens chromosome 20 open reading
frame 102 protein.
Length = 204
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 160 GALRCFLLVVVLGNSVRPSRSSRQDNIXXVHALIVATLHTLTXHDASD 17
GAL L + LG + RP+ + DN HAL T H +T D
Sbjct: 10 GALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGED 57
>AL109964-3|CAI42206.2| 149|Homo sapiens chromosome 20 open reading
frame 102 protein.
Length = 149
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 160 GALRCFLLVVVLGNSVRPSRSSRQDNIXXVHALIVATLHTLTXHDASD 17
GAL L + LG + RP+ + DN HAL T H +T D
Sbjct: 10 GALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGED 57
>AK056177-1|BAB71113.1| 204|Homo sapiens protein ( Homo sapiens
cDNA FLJ31615 fis, clone NT2RI2003011. ).
Length = 204
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 160 GALRCFLLVVVLGNSVRPSRSSRQDNIXXVHALIVATLHTLTXHDASD 17
GAL L + LG + RP+ + DN HAL T H +T D
Sbjct: 10 GALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGED 57
>AK131011-1|BAC85476.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ27501 fis, clone TST06374. ).
Length = 134
Score = 30.3 bits (65), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 73 LRXCCPGGTNGLALPSYRARRRGENIVARLTDYTGRICLPL 195
L+ P G GL LP + ++G ++A + DY I LPL
Sbjct: 46 LKLRLPPGYFGLLLPLSQQAKKGVTVLAGMIDYHDEISLPL 86
>AK055141-1|BAB70862.1| 260|Homo sapiens protein ( Homo sapiens
cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
2.7.7.6). ).
Length = 260
Score = 30.3 bits (65), Expect = 4.2
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 129 TTTRRKHRSAPYRLHRPHLP--SAHVS-EPPTEPXGTHI---SRLYPXCWR 263
T + K+ S P+ HR H P S H S PP P +H +RL P C R
Sbjct: 79 TGSSHKNHSPPWNPHRSHSPPWSPHRSHSPPWSPHRSHSWCRNRLAPRCTR 129
>BX248516-5|CAM25876.1| 245|Homo sapiens HLA-B associated
transcript 1 protein.
Length = 245
Score = 29.9 bits (64), Expect = 5.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 57 TMSAWTXXMLSWRDE--RLGLTELPSTTTR 140
TMS+WT M+ WR + +GL LP +R
Sbjct: 3 TMSSWTMKMMRWRQQLGEMGLRPLPRRMSR 32
>AL662847-22|CAO72085.1| 245|Homo sapiens HLA-B associated
transcript 1 protein.
Length = 245
Score = 29.9 bits (64), Expect = 5.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 57 TMSAWTXXMLSWRDE--RLGLTELPSTTTR 140
TMS+WT M+ WR + +GL LP +R
Sbjct: 3 TMSSWTMKMMRWRQQLGEMGLRPLPRRMSR 32
>AL662801-5|CAM25576.1| 245|Homo sapiens HLA-B associated
transcript 1 protein.
Length = 245
Score = 29.9 bits (64), Expect = 5.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 57 TMSAWTXXMLSWRDE--RLGLTELPSTTTR 140
TMS+WT M+ WR + +GL LP +R
Sbjct: 3 TMSSWTMKMMRWRQQLGEMGLRPLPRRMSR 32
>U44378-1|AAA91041.1| 552|Homo sapiens Dpc4 protein.
Length = 552
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 STTTRRKHRSAPYRLHRPHLPSAHVS-EPPTEPXGTH 233
STTT R+APY + PH + H+ PP P H
Sbjct: 264 STTTWTGSRTAPYTPNLPHHQNGHLQHHPPMPPHPGH 300
>BC002379-1|AAH02379.1| 552|Homo sapiens SMAD family member 4
protein.
Length = 552
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 STTTRRKHRSAPYRLHRPHLPSAHVS-EPPTEPXGTH 233
STTT R+APY + PH + H+ PP P H
Sbjct: 264 STTTWTGSRTAPYTPNLPHHQNGHLQHHPPMPPHPGH 300
>AF045447-1|AAC03051.1| 552|Homo sapiens deleted in pancreatic
carcinoma protein.
Length = 552
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 STTTRRKHRSAPYRLHRPHLPSAHVS-EPPTEPXGTH 233
STTT R+APY + PH + H+ PP P H
Sbjct: 264 STTTWTGSRTAPYTPNLPHHQNGHLQHHPPMPPHPGH 300
>AB043547-1|BAB40977.1| 436|Homo sapiens SMAD4 protein.
Length = 436
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 STTTRRKHRSAPYRLHRPHLPSAHVS-EPPTEPXGTH 233
STTT R+APY + PH + H+ PP P H
Sbjct: 264 STTTWTGSRTAPYTPNLPHHQNGHLQHHPPMPPHPGH 300
>BC063688-1|AAH63688.2| 385|Homo sapiens family with sequence
similarity 54, member A protein.
Length = 385
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 178 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 226
>BC011716-1|AAH11716.2| 301|Homo sapiens FAM54A protein protein.
Length = 301
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 94 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 142
>AL138828-2|CAI95285.1| 264|Homo sapiens family with sequence
similarity 54, member A protein.
Length = 264
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 172 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 220
>AL138828-1|CAI95284.1| 379|Homo sapiens family with sequence
similarity 54, member A protein.
Length = 379
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 172 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 220
>AL121713-3|CAI17909.1| 264|Homo sapiens family with sequence
similarity 54, member A protein.
Length = 264
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 172 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 220
>AL121713-2|CAI17908.1| 379|Homo sapiens family with sequence
similarity 54, member A protein.
Length = 379
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 172 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 220
>AK126859-1|BAC86725.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ44911 fis, clone BRAMY3009158. ).
Length = 131
Score = 29.1 bits (62), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 153 SAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCWR 263
+ P + RPHLP AH++ P + P T R + +R
Sbjct: 62 ATPAKEQRPHLPQAHLA-PTSSPAATGAGRWWAFLFR 97
>AK125758-1|BAC86277.1| 342|Homo sapiens protein ( Homo sapiens
cDNA FLJ43770 fis, clone TESTI2049469. ).
Length = 342
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 96 DERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPXGTHISRLYPXCW 260
DER+ L +L S+ R+A + LP + +S PP P S L P C+
Sbjct: 135 DERISLGQLSSS------RAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCF 183
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,873,816
Number of Sequences: 237096
Number of extensions: 1498916
Number of successful extensions: 4221
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4221
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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