Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060763.seq
         (520 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119098-1|AAM50958.1|  538|Drosophila melanogaster RE01138p pro...    43   3e-04
AF187980-1|AAG17034.1|  538|Drosophila melanogaster Partner of P...    43   3e-04
AE013599-3444|AAF46886.1|  538|Drosophila melanogaster CG9952-PA...    43   3e-04
AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative mic...    29   5.0  
Y10016-1|CAA71123.1|  280|Drosophila melanogaster ANON-66Da prot...    28   8.7  
Y10015-1|CAA71120.1|  280|Drosophila melanogaster ANON-66Da prot...    28   8.7  
AY071061-1|AAL48683.1|  280|Drosophila melanogaster RE14181p pro...    28   8.7  
AE014296-1483|AAF50394.1|  280|Drosophila melanogaster CG5994-PA...    28   8.7  

>AY119098-1|AAM50958.1|  538|Drosophila melanogaster RE01138p
           protein.
          Length = 538

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 171 HRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGAELHKFVRAWRDAADXK- 347
           H PH P++  S PP E  GTHIS L+P       +           +   AWRDAA  K 
Sbjct: 130 HLPHRPASPESPPPVE--GTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKS 187

Query: 348 ICLGVA*KPALHLRR 392
           +  GV  K  LHL+R
Sbjct: 188 VWKGVEAK--LHLKR 200



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +2

Query: 269 FERLPVRDRGRAAQVCSRVEGRS*XEDLFGRGVEAGSASTETCFLYCFTSLARRGVXKI 445
           FE LPVRD GRAAQVC+     +  + ++ +GVEA     +      F  L +RG+ K+
Sbjct: 161 FEHLPVRDLGRAAQVCTAWRDAAYAKSVW-KGVEA-KLHLKRSSPSLFNCLVKRGIKKV 217


>AF187980-1|AAG17034.1|  538|Drosophila melanogaster Partner of
           Paired protein.
          Length = 538

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 171 HRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGAELHKFVRAWRDAADXK- 347
           H PH P++  S PP E  GTHIS L+P       +           +   AWRDAA  K 
Sbjct: 130 HLPHRPASPESPPPVE--GTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKS 187

Query: 348 ICLGVA*KPALHLRR 392
           +  GV  K  LHL+R
Sbjct: 188 VWKGVEAK--LHLKR 200



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +2

Query: 269 FERLPVRDRGRAAQVCSRVEGRS*XEDLFGRGVEAGSASTETCFLYCFTSLARRGVXKI 445
           FE LPVRD GRAAQVC+     +  + ++ +GVEA     +      F  L +RG+ K+
Sbjct: 161 FEHLPVRDLGRAAQVCTAWRDAAYAKSVW-KGVEA-KLHLKRSSPSLFNCLVKRGIKKV 217


>AE013599-3444|AAF46886.1|  538|Drosophila melanogaster CG9952-PA
           protein.
          Length = 538

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 171 HRPHLPSAHVSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGAELHKFVRAWRDAADXK- 347
           H PH P++  S PP E  GTHIS L+P       +           +   AWRDAA  K 
Sbjct: 130 HLPHRPASPESPPPVE--GTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKS 187

Query: 348 ICLGVA*KPALHLRR 392
           +  GV  K  LHL+R
Sbjct: 188 VWKGVEAK--LHLKR 200



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +2

Query: 269 FERLPVRDRGRAAQVCSRVEGRS*XEDLFGRGVEAGSASTETCFLYCFTSLARRGVXKI 445
           FE LPVRD GRAAQVC+     +  + ++ +GVEA     +      F  L +RG+ K+
Sbjct: 161 FEHLPVRDLGRAAQVCTAWRDAAYAKSVW-KGVEA-KLHLKRSSPSLFNCLVKRGIKKV 217


>AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative
           microtubule severingprotein katanin p80 subunit protein.
          Length = 823

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -2

Query: 387 VDAEPASTPRPNRSSNQLRPSTREQT---CAARPLSRTGSLSXISANXLDTASRCEFXEA 217
           V   P STPRP+RS   L P   ++T    A    + TG       + + + S  E  + 
Sbjct: 516 VPQPPRSTPRPSRSRRPLPPPLHKRTTNNMAGAKQTSTGIFGGSKLSQVSSVSSMELHKL 575

Query: 216 QSGARTRERKANAAGVVCKARYDVFSSSS 130
                   +K++++ VV K +  + S+ S
Sbjct: 576 DDNMVL--KKSSSSNVVNKNKRPMGSAQS 602


>Y10016-1|CAA71123.1|  280|Drosophila melanogaster ANON-66Da protein
           protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -2

Query: 423 AKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPS-TREQTCAARPLSRTGSLSXISANXLD 247
           AK  K  +K+ ++ A  A  P P  S    RP+  R+    AR L ++G++  I      
Sbjct: 19  AKYQKLKKKKKALQAHKAPKPEPESSLTLKRPTDARDAREVARKLIKSGAIPAIQKQTKQ 78

Query: 246 TASRCEFXEAQSGARTRERKANAAGVVCKARYDVFSSSSCSVTR 115
             +  +  + Q      ER   +      A Y  FSS+   V +
Sbjct: 79  DQTSFKRPKGQ------ERAKRSTSETTVASYQPFSSTQNDVAQ 116


>Y10015-1|CAA71120.1|  280|Drosophila melanogaster ANON-66Da protein
           protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -2

Query: 423 AKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPS-TREQTCAARPLSRTGSLSXISANXLD 247
           AK  K  +K+ ++ A  A  P P  S    RP+  R+    AR L ++G++  I      
Sbjct: 19  AKYQKLKKKKKALQAHKAPKPEPESSLTLKRPTDARDAREVARKLIKSGAIPAIQKQTKQ 78

Query: 246 TASRCEFXEAQSGARTRERKANAAGVVCKARYDVFSSSSCSVTR 115
             +  +  + Q      ER   +      A Y  FSS+   V +
Sbjct: 79  DQTSFKRPKGQ------ERAKRSTSETTVASYQPFSSTQNDVAQ 116


>AY071061-1|AAL48683.1|  280|Drosophila melanogaster RE14181p
           protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -2

Query: 423 AKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPS-TREQTCAARPLSRTGSLSXISANXLD 247
           AK  K  +K+ ++ A  A  P P  S    RP+  R+    AR L ++G++  I      
Sbjct: 19  AKYQKLKKKKKALQAHKAPKPEPESSLTLKRPTDARDAREVARKLIKSGAIPAIQKQTKQ 78

Query: 246 TASRCEFXEAQSGARTRERKANAAGVVCKARYDVFSSSSCSVTR 115
             +  +  + Q      ER   +      A Y  FSS+   V +
Sbjct: 79  DQTSFKRPKGQ------ERAKRSTSETTVASYQPFSSTQNDVAQ 116


>AE014296-1483|AAF50394.1|  280|Drosophila melanogaster CG5994-PA
           protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -2

Query: 423 AKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPS-TREQTCAARPLSRTGSLSXISANXLD 247
           AK  K  +K+ ++ A  A  P P  S    RP+  R+    AR L ++G++  I      
Sbjct: 19  AKYQKLKKKKKALQAHKAPKPEPESSLTLKRPTDARDAREVARKLIKSGAIPAIQKQTKQ 78

Query: 246 TASRCEFXEAQSGARTRERKANAAGVVCKARYDVFSSSSCSVTR 115
             +  +  + Q      ER   +      A Y  FSS+   V +
Sbjct: 79  DQTSFKRPKGQ------ERAKRSTSETTVASYQPFSSTQNDVAQ 116


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,788,129
Number of Sequences: 53049
Number of extensions: 466020
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)