Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060763.seq
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11115-19|CAA77457.2| 246|Caenorhabditis elegans Hypothetical p... 29 1.5
U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 2.6
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 29 2.6
Z11126-9|CAA77475.2| 246|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z11115-21|CAA77461.2| 246|Caenorhabditis elegans Hypothetical p... 28 4.6
U40797-13|AAB37545.1| 193|Caenorhabditis elegans Hypothetical p... 27 6.1
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 27 8.0
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 27 8.0
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 27 8.0
>Z11115-19|CAA77457.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.15 protein.
Length = 246
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -2
Query: 429 RLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXL 250
R +DV+Q + Q+ + PRP S N L+ + E+TC L + I L
Sbjct: 44 RRMEDVQQLKMQIPKPVD--KKPRPPPSENNLKLISCEETCMDETLKNSSKPRMIYNKQL 101
Query: 249 DTASRCEF 226
A +F
Sbjct: 102 GRAESIDF 109
>U29613-3|AAC47062.2| 483|Caenorhabditis elegans Hypothetical
protein K02A6.3a protein.
Length = 483
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +2
Query: 269 FERLPVRDRGRAAQVC 316
F+RLPV+++GR +QVC
Sbjct: 19 FQRLPVKNKGRCSQVC 34
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSS 343
TP A++V+ +++SV + PASTP P +S
Sbjct: 120 TPSDAEEVEVKIEEISVRSTPASTPAPKSTS 150
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSS 343
TP A++V+ +++SV + PASTP P +S
Sbjct: 120 TPSDAEEVEVKIEEISVRSTPASTPAPKSTS 150
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 435 TPRLAKDVKQYRKQVSVDAEPASTPRPNRSS 343
TP A++V+ +++SV + PASTP P +S
Sbjct: 120 TPSDAEEVEVKIEEISVRSTPASTPAPKSTS 150
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 198 VSEPPTEPXGTHISRLYPXCWRLXLKDYRCETGAELHKF 314
+ EP EP T L CW + +++YR + AE K+
Sbjct: 452 IEEPDMEPVNT----LDSVCWLMQIREYRYKVAAEKSKY 486
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 345 SNQLRPSTREQTCAARPLSRTGSLSXISANXLDTASRCEFXEAQSGARTRERK 187
S +LR R T AA L R + SA +D S C + + RE+K
Sbjct: 615 SKELRQQKRAMTRAAEKLERLEA-KICSAEFIDDGSGCSYSQVDEDLLEREKK 666
>Z11126-9|CAA77475.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.12 protein.
Length = 246
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -2
Query: 429 RLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXL 250
R ++V+Q + Q+ + PRP S N L+ + E+TC L + I L
Sbjct: 44 RRMEEVQQLKMQIPKPVD--KKPRPPPSENNLKLISCEETCMDETLKNSSKPRMIYNKQL 101
Query: 249 DTASRCEF 226
A +F
Sbjct: 102 GRAESIDF 109
>Z11115-21|CAA77461.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.12 protein.
Length = 246
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -2
Query: 429 RLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSLSXISANXL 250
R ++V+Q + Q+ + PRP S N L+ + E+TC L + I L
Sbjct: 44 RRMEEVQQLKMQIPKPVD--KKPRPPPSENNLKLISCEETCMDETLKNSSKPRMIYNKQL 101
Query: 249 DTASRCEF 226
A +F
Sbjct: 102 GRAESIDF 109
>U40797-13|AAB37545.1| 193|Caenorhabditis elegans Hypothetical
protein C28C12.2 protein.
Length = 193
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 450 LVIFXTPRLAKDVKQYRKQVSVDAEPASTPRPNRSSN-QLRPSTREQTCAARPLSRTGSL 274
+ + PR + + ++ QVS+ A PAST R + ++ PS + + C + +T S
Sbjct: 122 IAVSPPPRPSSEPLRHLSQVSLSARPASTEPVRRDVHWRVHPSAKIRKCT---VPKTPSF 178
Query: 273 SXISANXLDTASR 235
+ + + L+ +R
Sbjct: 179 ARPTKSWLNRVNR 191
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 133 RRGENIVARLTDYTGRICLPLTCPSPRLSLXE 228
R E +VA TDY +IC P P P L+ E
Sbjct: 372 RPNEFVVANFTDYFDKICDPAD-PKPMLTTPE 402
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -2
Query: 432 PRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLSRTGSL 274
P A K + VS S+P P RP+T Q+ A++ + T L
Sbjct: 265 PPTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTASQNVETTTKL 317
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 93 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTE 218
R ERLG T L ++ S+ P +PS H + PPT+
Sbjct: 953 RHERLGKT-LSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQ 993
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 93 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTE 218
R ERLG T L ++ S+ P +PS H + PPT+
Sbjct: 953 RHERLGKT-LSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQ 993
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,014
Number of Sequences: 27780
Number of extensions: 222305
Number of successful extensions: 618
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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