Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060763.seq
(520 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 25 0.62
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 22 3.3
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 22 4.3
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 22 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 24.6 bits (51), Expect = 0.62
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 399 KQVSVDAEPASTPRPNRSSNQLR 331
++VS+D P P PN S N ++
Sbjct: 93 REVSIDGNPLIAPYPNWSYNDVK 115
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 22.2 bits (45), Expect = 3.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 97 TNGLALPSYRARRRGE 144
T L PSYR + RGE
Sbjct: 566 TKELLSPSYRVKERGE 581
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 21.8 bits (44), Expect = 4.3
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 93 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEP-PTEPXGTHISRLYPXCWRLX 269
R + L E P R+ +S + R P E + +HI R YP W
Sbjct: 50 RQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKI 109
Query: 270 LKDY 281
++ Y
Sbjct: 110 VQQY 113
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 21.8 bits (44), Expect = 4.3
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 93 RDERLGLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEP-PTEPXGTHISRLYPXCWRLX 269
R + L E P R+ +S + R P E + +HI R YP W
Sbjct: 50 RQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKI 109
Query: 270 LKDY 281
++ Y
Sbjct: 110 VQQY 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 378 RPATVEDTSASLPLS 392
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 446 RPATVEDTSASLPLS 460
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 333 RPSTREQTCAARPLS 289
RP+T E T A+ PLS
Sbjct: 446 RPATVEDTSASLPLS 460
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,152
Number of Sequences: 438
Number of extensions: 2797
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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