Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060763.seq
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01600.1 68414.m00077 cytochrome P450, putative similar to cy...    33   0.087
At1g61080.1 68414.m06877 proline-rich family protein                   32   0.27 
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    31   0.61 
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    30   0.81 
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    30   0.81 
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa...    28   3.3  
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At2g13270.1 68415.m01462 hypothetical protein                          28   4.3  
At4g36390.1 68417.m05170 radical SAM domain-containing protein /...    27   5.7  
At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family pr...    27   5.7  

>At1g01600.1 68414.m00077 cytochrome P450, putative similar to
           cytochrome P450 GI:10442763 from [Triticum aestivum]
          Length = 554

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 39  KVCSVATMSAWTXXMLSWRDERLGLTELPSTTTRRKHRSAPYRLHRPHLP--SAHVSEPP 212
           ++CSV   +  T  + SW +E LG  E+      +   S   RL+ P +P  S HV    
Sbjct: 337 EICSVLIETRGTDDVASWTEEPLGFDEIDRLVYLKAAISETLRLY-PSVPEDSKHVENDD 395

Query: 213 TEPXGTHI 236
             P GT +
Sbjct: 396 VLPDGTFV 403


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = -2

Query: 468 SSK*QILVIFXTPRLAKDVKQYRKQVSVDAEPASTPRPNRSSNQLRPSTREQTCAARPLS 289
           SSK Q +    +P+++K  KQ  K  S   +P+S+P P RSS  +  S    T + R  S
Sbjct: 8   SSKLQPVKGQASPKVSKSSKQDVKTSSSSPKPSSSPIPIRSSKSIL-SGSYLTSSRRVSS 66

Query: 288 RTGSLSXIS 262
             G+L  IS
Sbjct: 67  PIGNLKNIS 75


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 RRKHRSAPYRLHRPHLPSAHVSEPPTEPXG 227
           + KH +  +   +P  PS+ +S+PPT P G
Sbjct: 35  KHKHNNHNHHSSKPKPPSSSISQPPTPPPG 64


>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 118 SYRARRRGENIVARLTDYTGRICLPLTCPSPRLSLXELTSRGCIQXVGAYX*KTTGARQG 297
           S + R   +N+   L D TGR CL  +  S  + L +L  + C+     +          
Sbjct: 248 SMKLRGHTDNVRVLLLDSTGRFCLSGSSDS-MIRLWDLGQQRCLHTYAVHTDSVWALACN 306

Query: 298 PSCTSLFARGGTQLIXRSVWAWRRSRL 378
           PS + +++ G  Q +  +  A R S L
Sbjct: 307 PSFSHVYSGGRDQCLYLTDLATRESVL 333


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 118 SYRARRRGENIVARLTDYTGRICLPLTCPSPRLSLXELTSRGCIQXVGAYX*KTTGARQG 297
           S + R   +N+   L D TGR CL  +  S  + L +L  + C+     +          
Sbjct: 248 SMKLRGHTDNVRVLLLDSTGRFCLSGSSDS-MIRLWDLGQQRCLHTYAVHTDSVWALACN 306

Query: 298 PSCTSLFARGGTQLIXRSVWAWRRSRL 378
           PS + +++ G  Q +  +  A R S L
Sbjct: 307 PSFSHVYSGGRDQCLYLTDLATRESVL 333


>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 159

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   RKPVRCIVTC*SVQCRHNECVD 73
           R+PVRCI  C    C H +CVD
Sbjct: 104 REPVRCIPEC--NHCFHTDCVD 123


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 123 PSTTTRRKHRSAPYRLHRPHLPSAHVSEPP-TEPXGTHISRL 245
           P+  +  K    P     PH+  AH ++PP TEP   H + +
Sbjct: 422 PAPISAAKSHIVPISAPLPHVVFAHAAQPPITEPREPHANEV 463


>At2g13270.1 68415.m01462 hypothetical protein
          Length = 378

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 108 GLTELPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEP 221
           G+T + S+TT   H +AP  LH P     + S PP  P
Sbjct: 248 GITAISSSTTVTSH-NAPLILHPPPKRLRYSSPPPKPP 284


>At4g36390.1 68417.m05170 radical SAM domain-containing protein /
           TRAM domain-containing protein similar to CDK5
           activator-binding protein [Rattus norvegicus]
           GI:7330738; contains Pfam profiles PF00919: UPF0004
           family protein, PF01938: TRAM domain, PF04055: radical
           SAM domain protein
          Length = 640

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 418 GCKTVQEAGLRRCRAGFYATPKQIFXSAASLHARTNLCSSAPVSHR*SFKXKRQXSGYSL 239
           GC    +A  +RC A  + + K    S++S  A    C S+  +HR + K   +  G+SL
Sbjct: 18  GCSLCFKASTQRCFALRFLSSKATHASSSSSSALLPRCRSS--THRLTQKPINRKKGFSL 75

Query: 238 EM 233
            +
Sbjct: 76  NL 77


>At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 198

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 387 VDAEPASTPRPNRSSNQLRPSTREQTCAAR 298
           VD +PA+ P+PNR    +R S   QT  AR
Sbjct: 101 VDIDPATVPKPNR--RNVRISDDPQTVVAR 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,667
Number of Sequences: 28952
Number of extensions: 205574
Number of successful extensions: 533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)