Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060762.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    35   0.013
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    27   1.9  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   4.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   5.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   7.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 395 RRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGVEPERSL 517
           R AA +   S  + +VLLV+S+++  +W+VP GG E + S+
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESV 82


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 555 SGFLKYLPHRSDRRLLSGSTPPPGTIQLS 469
           +G  KYL  +SD R+ S    PPG++  S
Sbjct: 196 AGVTKYLKEKSDGRVASFVADPPGSVLYS 224


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 661 HSG*FLGHSHNINLCSV--FVFSVPRILQDIVLVSRSLRLP 545
           H+  +  HS ++NLC V  ++F  P+ LQ I  +    +LP
Sbjct: 238 HTDVYASHSFSVNLCGVKCWLFIDPKDLQTIASLYDDQQLP 278


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 644 GSQS*HKPLFGVCVLGSSNTPRHRPSFPITPASSSTSRIAVTEGSFPALLP 492
           G++S H P           +P   P  P  PA   TSR A+    FP   P
Sbjct: 711 GTRS-HSPSVSPVGFSFDKSPVTTPPLPTAPAPVITSRHALVNNQFPTNNP 760


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 587 TPRHRPSFPITPASSSTSRIAVTEGS 510
           TPRH+P F ++ A SS ++    E S
Sbjct: 618 TPRHKPKFDLSKALSSVAKSNNIENS 643


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 226 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 128
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 593 SNTPRHRPSFPITPASSSTSRIAVTEGS 510
           +NT   +PS   TP +++T+++++T G+
Sbjct: 98  TNTSISKPSQTATPQNTNTTQVSLTNGT 125


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 590 NTPRHRPSFPITPASSSTSRIAVTEG 513
           NT  H P+   T +SSST+ +A  +G
Sbjct: 813 NTSFHAPTVSSTTSSSSTTSLAANKG 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,944
Number of Sequences: 5004
Number of extensions: 56241
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)