Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060762.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 32 0.49
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 32 0.49
11_06_0207 + 21214631-21216121 31 0.85
06_01_1033 - 8080179-8080685 31 1.1
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 30 1.5
02_05_0651 + 30644241-30644615,30644751-30644858 29 3.4
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 29 4.5
06_03_1159 + 28084786-28085428,28085520-28086166 29 4.5
03_02_0775 - 11096620-11097240 29 4.5
01_07_0289 + 42540059-42541141 29 4.5
07_01_1099 - 10090498-10090509,10090800-10091739,10093599-10093633 28 7.9
06_01_0931 + 7192519-7194075 28 7.9
02_05_1199 + 34920240-34920304,34920411-34920627,34921306-34921419 28 7.9
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 581 RHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRA 465
R RP+ P+TPAS R+A G L RP RA
Sbjct: 576 RRRPTPPLTPASPPLERVASKAGGSRGWLRRPPPEQARA 614
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -3
Query: 629 HKPLFGVCVLGSSNTPRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTS 450
H+PLF + +T P P + ST V G PALLP P ++ A +S
Sbjct: 30 HEPLFPIEWTPPPSTASPSPPSPDFSSDPSTPATPVDNGG-PALLPPPPPNTVAADVSSS 88
Query: 449 PAGP 438
+GP
Sbjct: 89 RSGP 92
>11_06_0207 + 21214631-21216121
Length = 496
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 341 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIVPGG 493
++K P I ++D E RR+ + S + V + S + D W VP G
Sbjct: 422 LIKNGPRDIGVFDLENRRRKKTISPIWSSWPSPVWITPSIAKADGWCVPCG 472
>06_01_1033 - 8080179-8080685
Length = 168
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 526 AMREVLEEAGVIGKLGRCLG 585
A RE LEEAGV+G++G LG
Sbjct: 75 ARREALEEAGVLGEIGASLG 94
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 572 PSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGPLF 432
PS +TP+SS+++ + + S P + P P ++ A P+ P F
Sbjct: 40 PSLALTPSSSASASASASTSSRPKVRPSPRRAYAAAQWVALPSHPAF 86
>02_05_0651 + 30644241-30644615,30644751-30644858
Length = 160
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 341 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIVPGGGVEPERS 514
+V + ++ Y G R CI VRS E EVL++T S++ + P GG E + S
Sbjct: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVIT-SQKGHGMMFPKGGWELDES 62
Query: 515 L 517
+
Sbjct: 63 M 63
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 587 TPRHRPSFPITPASSSTSRIAVTEGSFPALLPRP--XQSSCRAVSKTSPA 444
TP P+ PI PAS+ + + + P+ P P ++ R+ S +SPA
Sbjct: 63 TPAVEPTLPIPPASTPPTPPQPSASTEPSTAPPPAVDDAAARSSSSSSPA 112
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 410 ICVRSDAETEVLLVTSSRRPDNWIVPGGGVEPERSLLSLRC 532
+ RSDA+ E+ + T R W GGGV S L LRC
Sbjct: 109 LAARSDAKCELRISTPGRGA--WAGAGGGVPFPHSPLLLRC 147
>03_02_0775 - 11096620-11097240
Length = 206
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 424 RCRNRGPAGDVFETARQLDCXGRGSRAGKEPSVTA 528
R R RG GD A D G GSR G P + A
Sbjct: 101 RERRRGGGGDAVAAAGDGDAGGSGSRGGVAPVMVA 135
>01_07_0289 + 42540059-42541141
Length = 360
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 653 LVLGSQS*HKPLFGVCVLGSSNTPRHRPSFPITPASSSTSRIA 525
++LGS S FG C L S H P F + P + ++ ++
Sbjct: 130 VILGSASSSAVYFGTCELAKSLLRPHLPPFLVPPLAGASGNVS 172
>07_01_1099 - 10090498-10090509,10090800-10091739,10093599-10093633
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 546 LKYLPHRSDRRLLSGSTPPPGTIQLSG 466
++YL +R+L+SG+ P GTI G
Sbjct: 103 IEYLIESEERKLMSGTIPDSGTIHAHG 129
>06_01_0931 + 7192519-7194075
Length = 518
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -3
Query: 584 PRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGPLF 432
PR RPS P P+SSS+S + PA P + A P G F
Sbjct: 6 PRWRPSSPPMPSSSSSSPSSSFTADPPAEFLCPISGTLMADPVVVPPGQTF 56
>02_05_1199 + 34920240-34920304,34920411-34920627,34921306-34921419
Length = 131
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 380 DEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGVEPERSLLS 523
D+G R RAA + ++ E+++V +R+P V GG P+ +L++
Sbjct: 49 DDGARARAAAVEPKA---AEIVVVEEARQPAAETVNGGANSPDLTLIT 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,322
Number of Sequences: 37544
Number of extensions: 389070
Number of successful extensions: 1208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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