Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060762.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   7e-14
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   75   7e-14
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.87 
SB_22877| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)                29   2.7  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               28   8.1  
SB_39924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  28   8.1  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)                      28   8.1  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +2

Query: 341 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGVEP 505
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+VP GG+EP
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEP 137


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +2

Query: 341 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGVEP 505
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+VP GG+EP
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEP 102


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
 Frame = -1

Query: 364  RIRLLLYHFCLQTRKHERNERSQN*Y--RH*LKRKTMKRQNFLMINK---RH--IRCILC 206
            RIRL   H   + R H+R+E S+N    RH + RK ++ ++  + N+   RH   R  L 
Sbjct: 842  RIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCNRLCDRHEVSRKRLR 901

Query: 205  RTYPFSTIKLHNVHKKS 155
              +  S I+LH+ H+ S
Sbjct: 902  DRHKASRIRLHDRHEAS 918


>SB_22877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 534 PHRSDRRLLSGSTPPPGTIQLSGRLEDVTSRTSVS-ASERTQIHAARRL 391
           P  +D  L++   PP   IQLS R E++ S T+ S  SER Q++ +R L
Sbjct: 40  PKNNDPDLVNSEIPPTDIIQLS-RHENLQSITNYSTVSERQQMNMSRTL 87


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 423 ERTQIHAARRLKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN*KEKL*N 256
           +RT     R ++ +   +++  GF   +  CK  N +E N+ K N   N ++K  N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTNERKKCGN 108


>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
          Length = 276

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 537 LPHRSDRRLLSGSTPPPGTIQLSGR-LEDVTSRTSVSASERTQIHAARR 394
           L + S R+ +  STPP   +  S R L + +SR  V+AS R ++H++ R
Sbjct: 142 LVNASSRQRVLSSTPP--LVNASSRQLVNASSRQLVNASSRQRVHSSMR 188


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 599 GSSNTPRHRPSFPITPASSSTSRIAVTEGSFPALLPRP 486
           G +N+PR  P FP  P    TS +  +    P   P P
Sbjct: 438 GHANSPRPIPQFPSNPTGMQTSSMPQSPVRSPMNAPSP 475


>SB_39924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 514 APFRLYSPARXNPVVGPSRRRHQ 446
           A   LY+PA  NP+  P  RRHQ
Sbjct: 99  ARLTLYAPAIKNPIALPFMRRHQ 121


>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -2

Query: 549 FLKYLPHRSDRRLLSGSTPPPGTIQLSGRLEDVTSRTSVSASERTQIHAARRLKPSSSYI 370
           + K   +RSD+R   G+T PPG   + G      S    + +E + + +  R    + Y 
Sbjct: 163 YCKQQQNRSDKRPHIGTT-PPGMFYVIGNKCTFRSLLLTNCTEHSDLRSFSR--SFAKYK 219

Query: 369 LIELGFSFTIFVC 331
           ++ L  SF + VC
Sbjct: 220 MLLLFASFALLVC 232


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 572 PSFPITPASSS--TSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGPLFRHLNARKYMPP 399
           P+  +TP +S+  T    VT  +   +LP+P  +S      ++PA        A   +PP
Sbjct: 442 PTATVTPTASNAFTETTTVTSTTTITVLPQPTSASSSITPSSTPATGTATIATATYSVPP 501

Query: 398 -VA*NPRRHISLSN*ASPLP 342
            VA   ++   +++   P P
Sbjct: 502 SVAPTAKKRQDIASPVQPSP 521


>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
          Length = 572

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 514 APFRLYSPARXNPVVGPSRRRHQ 446
           A   LY+PA  NP+  P  RRHQ
Sbjct: 167 ARLTLYAPAIKNPIALPFMRRHQ 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,308,155
Number of Sequences: 59808
Number of extensions: 442168
Number of successful extensions: 1216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)