Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060762.seq
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.3  
AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    25   2.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.1  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.0  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.0  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.0  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 548 SSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGPLFRHLNAR 414
           S+  S++AV   + PAL+ R  Q   +      P GPL +++  R
Sbjct: 509 SAPRSKLAVYGTNMPALVARIRQLHQQGQFSEMPRGPLGQYIEVR 553


>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 475 VVGPSRRRHQQDLCFGI*THANTCRPSP 392
           ++  + + H+ D CFGI TH  TC+  P
Sbjct: 338 ILSLNEQGHKID-CFGIGTHLVTCQRQP 364


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 412 NTCRPSPKTLVVIYPYRIRLL 350
           N CRP  +T+  +Y  R+ L+
Sbjct: 842 NECRPDAETVAYLYHIRMELI 862


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 404 ACICVRSDAETEVLLVTSSRRPDNW 478
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 404 ACICVRSDAETEVLLVTSSRRPDNW 478
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 587  TPRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGP 438
            TPR  P+  + PA  +     +   + PA  P P +   R ++      P
Sbjct: 1100 TPRIGPAPAVEPAKKTLVATILPNSAKPAQQPPPLRRDARELASMRSFSP 1149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,964
Number of Sequences: 2352
Number of extensions: 14880
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)