Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060762.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    62   3e-10
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin p...    28   7.1  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    27   9.4  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
 Frame = +2

Query: 338 KMVKEKPNSIRIYDDEGFRRRAACICVR-SDAETEVLLVTSSRRPDNWIVPGGGVEPERS 514
           K  + + N +R+ D +GFR RAA +C++ +  ET VLLV+  +    W+VPGGG+E +  
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDEC 65

Query: 515 LLSLRCGRYLRKPE*SGN*DDVLEYSRNREHKHRTEVYVMTVTQEL 652
                    + +          +   ++   KHRT+V++M V++EL
Sbjct: 66  AEEAAHRELMEEAGVRATILKKIGMFQDDVRKHRTQVFLMEVSEEL 111


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 193 FSTIKLHNVHKKS--NYNNNKTTIRAMF*L*LAFDRIFQA-HVE 71
           ++T KL N+HKKS  N+NN+K  +  +      FD +F   HV+
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSKKCLTLL----TRFDDLFSIDHVD 110


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 587 TPRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSK--TSPA 444
           TP   PS   +   SSTS    + GS    +  P QSS    S+  TSPA
Sbjct: 512 TPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 561


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 587 TPRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSK--TSPA 444
           TP   PS   +   SSTS    + GS    +  P QSS    S+  TSPA
Sbjct: 719 TPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 768


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 587 TPRHRPSFPITPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSK--TSPA 444
           TP   PS   +   SSTS    + GS    +  P QSS    S+  TSPA
Sbjct: 719 TPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 768


>U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin
           protein 4 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 567 FPDHSGFLKYLPHRSDRRLLSGSTPPPGTIQLSGRLEDVTSRTSVS--ASERTQI 409
           FP   G LK  P      L + STP P  + L   LED T + S S   SER  I
Sbjct: 62  FPKGPGGLKQSPSPLQSPLSNDSTPSP-VVPLQNLLEDRTRKLSPSELPSERGNI 115


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 528 RSDRRLLSGSTPPPGTIQLSGRLEDVTSRTSVS 430
           R+  R  SG+  P GT  ++  +  VT+RTS S
Sbjct: 171 RTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSS 203


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 649 FLGHSHNINLCSVFVFSVPRILQDIVLVSRSLRLPQVPPASQ*QKAPFR 503
           F  H  + ++ ++F++   R+    +L+ + LRLP+  P S     P R
Sbjct: 285 FTLHGTSSSIATIFIYKPYRVYTKRLLLHKILRLPEPKPISTLASIPNR 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,022
Number of Sequences: 27780
Number of extensions: 331073
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)