Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060762.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01280.1 68418.m00037 expressed protein                             30   1.6  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    29   2.2  
At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    29   3.8  
At1g73540.1 68414.m08512 MutT/nudix family protein low similarit...    28   5.0  
At1g14860.1 68414.m01777 MutT/nudix family protein low similarit...    28   5.0  
At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea...    28   6.6  
At1g18300.1 68414.m02286 MutT/nudix family protein similar to SP...    27   8.8  

>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 593 SNTPRHRPSFPITPASSSTSRIAVTEGSFPALL---PRPXQSSCRAVSKTS 450
           S TP  RPS P + A+S+T+R  +T  S  +      RP  SS    S+ +
Sbjct: 104 SKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVT 154


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 557 TPASSSTSRIAVTEGSFPALLPRPXQSSCRAVSKTSPAGP 438
           TP+ SSTS    T+G  P   P P QS   A+S +SP  P
Sbjct: 586 TPSPSSTSNSIATQGPPPPPPPPPLQSHRSALS-SSPLPP 624


>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 337 CLQTRKHE-RNERSQN*YRH*LKRKTMKRQNFLMINKRHIRCILCRTYPFSTIKLHNVHK 161
           CL+T   E +  + ++  +  LKRK   R+NF  + KR+ R    R      I +H    
Sbjct: 24  CLKTILREIKTSQKRSESQGVLKRKLSGRRNFSGLTKRYSRTFSSRDLENHDIMVHATTG 83

Query: 160 KSNYNNNKTTI 128
              +   +TTI
Sbjct: 84  DDGFEKYETTI 94


>At1g73540.1 68414.m08512 MutT/nudix family protein low similarity
           to SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 198

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 526 AMREVLEEAGVIGKLGRCLGVFE 594
           A+RE +EEAGV G+L   LG ++
Sbjct: 110 ALRETIEEAGVTGQLEESLGKWQ 132


>At1g14860.1 68414.m01777 MutT/nudix family protein low similarity
           to SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 176

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 526 AMREVLEEAGVIGKLGRCLGVFE 594
           A RE LEEAGV+G + R LG ++
Sbjct: 72  ASRESLEEAGVVGNVERQLGKWD 94


>At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 816

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 496 SRAGKEPSVTAMREVLEEAGVIGKLGRCLGVFEE 597
           SR G +P V     ++   G  G + RC+ ++EE
Sbjct: 591 SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEE 624


>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to uncharacterized protein KIAA0007 (GI:1663708)
           {Homo sapiens}  1.2e-11
          Length = 615

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -2

Query: 480 IQLSGRLEDVTSRTSVSASERTQIHA 403
           +QLSGRL+ VT++ + +A  +TQI A
Sbjct: 546 LQLSGRLQLVTAQINKAAGSQTQITA 571


>At1g18300.1 68414.m02286 MutT/nudix family protein similar to
           SP|Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate
           hydrolase (EC 3.6.1.-) (Ap6A hydrolase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 207

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 526 AMREVLEEAGVIGKLGRCLGVFE 594
           A+RE +EEAGV G+L   LG ++
Sbjct: 113 ALRETIEEAGVTGELEEKLGKWQ 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,670
Number of Sequences: 28952
Number of extensions: 306177
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)