Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060761.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    24   1.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.4  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 145 NPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDIEHLPLLTSFLTRCQTKQ 306
           N  + +A G+T Q+ T   + +  G P++  +V++ ++ +  L+       T Q
Sbjct: 171 NRYETVAHGMTVQKTTLFFFNRTFGVPIFLVLVFVQMQSVQDLSDIFYYKDTAQ 224


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 296 KQNKKQKLPKAIMWSSTLT 352
           + N   K+P  I+WSS L+
Sbjct: 442 RANNGVKIPLVIIWSSNLS 460


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 578 KTLIAVD-PNSNSQYSLTLFSMHWYISDMLPAIWTTCQVPYDPTINSTKTTGTLLHGILY 402
           K+L A D    NS   + L++ H   +D++    +  +      + ++    TLL  + Y
Sbjct: 418 KSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKARYVIQTWVPASDNLPTLLLELGY 477

Query: 401 RINIVTK 381
           RI + TK
Sbjct: 478 RIIVSTK 484


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,778
Number of Sequences: 336
Number of extensions: 4364
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)