Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060761.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 31 0.12
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 27 1.9
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 27 3.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 3.3
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 26 4.4
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 26 5.8
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 5.8
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 7.7
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 25 7.7
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 455 DHMELDRWSKWREACH*CTNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFT 634
D E D W+ WRE T A+ + +EN +W + F++ K++ P+ + +
Sbjct: 305 DWKETDIWASWREITK--TKANYDNGIRLENASWRTWMKHKFKL-KTISPETLNWLKECD 361
Query: 635 DTLLDGPL 658
T L GPL
Sbjct: 362 VTWLYGPL 369
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 108 RKSSGEFGGIGGKSRGYNSSWSHKPKRNNYSLGTRHRETFVQRNCLAGYRTSSTIDKLLD 287
R + G F GG + + + K K +YS T + F +AG S + LD
Sbjct: 181 RNAPGSFALFGGNA--FAKEYIFKLK--DYSQATFFQNFFTS---IAGASASLIVSAPLD 233
Query: 288 TVPNKTRNKNYLKPLCGLPL 347
+ + +NKN+ P G +
Sbjct: 234 VIKTRIQNKNFDNPQSGFTI 253
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 55 GWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGT 216
G E +P ++ ++K +EK NLV LG D A + W Q T
Sbjct: 94 GEKELEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFT 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 303 TRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVD 398
T N +K + GLP+ P F K+R+ D +
Sbjct: 543 TNISNAMKAVNGLPIHPLFKKSKIRYAPDRCE 574
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 278 LVNS-GRCSISSQTIALYKGFPVPCSQTIVVSLWFVTPTAIISS 150
L+NS G ++ +A G PV VV+LW+ P ++ S
Sbjct: 133 LINSRGELKLADFGLARSIGIPVNTFSNEVVTLWYRAPDVLLGS 176
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 237 NCLAGYRTSSTIDKLLDTVPNKTRNKNYLKPLCGLP 344
N L G R + DK DT P+ K L+ G+P
Sbjct: 140 NALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIP 175
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 234 VVQRFPCALFPNYSCFSLV 178
+V + PCAL PN +C +V
Sbjct: 178 IVLQIPCALAPNIACLLIV 196
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 164 AIISSGFPPNATK--FSTAFSMHVLTTANIAYGSCSTQPS*G 45
AI+SS P + +T H L+T I YG T P G
Sbjct: 268 AIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFG 309
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 7.7
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 105 HRKSSGEFGGIGGKSRGYNSSWSHKPKRNNYSLGTRHRETFVQRNCLAGYRTSSTIDKLL 284
HRK G G GG + + P Y R + +N L +R + +D+L
Sbjct: 25 HRKHPGGRGKAGGLQHLRSHFDKYHP---GYFGKVGMRRFHLMKNPL--WRPTVNLDRLW 79
Query: 285 DTVPNKTRNK 314
VPN+TR K
Sbjct: 80 TLVPNETREK 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,960
Number of Sequences: 5004
Number of extensions: 69106
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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