Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060761.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 103 1e-22
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 31 0.85
08_01_0566 - 5028512-5029150 31 1.1
06_03_0675 - 23428948-23431389 29 2.6
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 29 3.4
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 3.4
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856... 28 6.0
06_03_1139 + 27925970-27925985,27926427-27927079 28 6.0
08_02_0261 + 15001603-15002217 28 7.9
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 28 7.9
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 103 bits (248), Expect = 1e-22
Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = +1
Query: 10 VAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVENLVALGGNPE-DIIAVGVTNQR 186
VA HQ E +QH+P+ GWVE DP I+ VK C+ KA++ A G N + + A+G+TNQR
Sbjct: 29 VASHQLEFKQHYPEAGWVEHDPMEIMESVKICMAKALDKAAADGHNMDVGLKAIGITNQR 88
Query: 187 ETTIVWEQGTGKPLYNAIVWLDIEHLPL 270
ETT++W + TG PLYNAIVW+D P+
Sbjct: 89 ETTVMWSKSTGLPLYNAIVWMDARTSPI 116
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 9/67 (13%)
Frame = +3
Query: 333 CGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTGGPNG-------- 488
CGL +S YFSA+K+ WL +NVD VKNA++ G FGT+D W+IWNLTGG G
Sbjct: 135 CGLAISTYFSALKVLWLIENVDAVKNAVRAGDALFGTIDTWLIWNLTGGIGGTDRDGNKV 194
Query: 489 -GKHVTD 506
G HVTD
Sbjct: 195 FGHHVTD 201
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/60 (48%), Positives = 36/60 (60%)
Frame = +2
Query: 506 CTNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFTDTLLDGPLKGVPIAGCL 685
C+NASRTMLMN++ L+WD L +P +LP I S+ PL GVPIAGCL
Sbjct: 202 CSNASRTMLMNLKALDWDKPTLETLGIPAEILPKIISNSERIGVVANGFPLAGVPIAGCL 261
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 581 RKTLIAVDPNSNSQYSLTLFSMHWYISDMLPAIWTTCQ 468
R T + VDP+SN+ Y F+ W + D L A+ T +
Sbjct: 226 RNTDLNVDPSSNNYYPTVFFNEFWLLRDKLIALNETVE 263
>08_01_0566 - 5028512-5029150
Length = 212
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +3
Query: 3 ARGCIPSKRVRTAFSSRRLGGARSVCNIG--RS*NVH---RKSSGEFGGIGGKSRGYNS- 164
A+G IP+ + R F+ R L R++ G + N+H R G G GG +R +S
Sbjct: 32 AKGGIPAAQQRLMFAGRHLEDGRTLAEYGIKKEANLHLALRLRGGGAAGGGGDARAADSG 91
Query: 165 SWSH 176
W H
Sbjct: 92 GWGH 95
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 157 IIAVGVTNQRETTIVWEQGTGKPLY 231
I AV +N E T+VW G+P+Y
Sbjct: 61 IFAVWFSNSAEKTVVWSANLGRPVY 85
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 153 LWI-SPQCHQILHCFFYARFNYGQ 85
LW+ S +CH + C+F++R+ GQ
Sbjct: 122 LWVPSSKCHLSIACYFHSRYKAGQ 145
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 70 DPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNA 237
D Y +L+ V+ I++ ++L ++ D+ AVG +Q + T W + + Y+A
Sbjct: 26 DKYVLLSGVRHEIQELKDDLESMNACLRDLAAVGDYHQSQQTRTWMKQVREVAYDA 81
>07_01_1010 +
8561656-8561764,8563666-8563919,8564309-8564331,
8564926-8564962,8565503-8565985
Length = 301
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 129 GGIGGKSRGYNSSWSHKPKRNN 194
GG GG RGY S SH P N
Sbjct: 50 GGGGGHGRGYTSHRSHNPNNPN 71
>06_03_1139 + 27925970-27925985,27926427-27927079
Length = 222
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +3
Query: 240 CLAGYRTSSTIDKLLDTVPNKTRNKNYLKPLCGLP-LSPYFSAVKLRWLSDNVDPVKNAM 416
C+ + TID LL P + + GL + P+ L WL D V A
Sbjct: 131 CVLCDQGDETIDHLLVACPESRQLWWFALRAIGLSDILPFNEPSFLLWLCDKRVKVAKAQ 190
Query: 417 KKGTCRFGTVDCWIIW 464
++G + W IW
Sbjct: 191 RRGFDTIAPLIAWTIW 206
>08_02_0261 + 15001603-15002217
Length = 204
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 206 SQTIVVSLWFVTPTAIISSGFPPNATKFSTAFSMHVLTTANIAYGSCSTQPS*G 45
S+ + +SL + S F P + S++ + + ++ N YGSC+T P G
Sbjct: 4 SRRVAISLLLLVAAMASSFSFSPCTAQSSSSCASYTFSS-NQQYGSCATLPRLG 56
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 222 TFVQRNCLAGYRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDP 401
TFV + RT + +L N+ R K Y L L + + A +R L+ VDP
Sbjct: 828 TFVVSAAILKVRTEEVAELVLIATHNECRKKGYFSLLLSL-IEAHLKAWNVRLLTAPVDP 886
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,459
Number of Sequences: 37544
Number of extensions: 457847
Number of successful extensions: 1418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -