Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060761.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   3e-23
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               31   0.87 
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    31   0.87 
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_21323| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   29   4.6  
SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)           28   6.1  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score =  105 bits (252), Expect = 3e-23
 Identities = 40/71 (56%), Positives = 56/71 (78%)
 Frame = +3

Query: 297 NKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTG 476
           ++T  +   + +CGLP++ YFSAVKLRWL DN +PV+ A+  G C FGTVD W++WN+TG
Sbjct: 224 DQTNLRPMAESICGLPVNTYFSAVKLRWLIDNSEPVRKAVDDGRCMFGTVDSWLLWNMTG 283

Query: 477 GPNGGKHVTDV 509
           GPNGG+H+TD+
Sbjct: 284 GPNGGQHITDI 294



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +1

Query: 10  VAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDI 159
           +A+HQ E +  +P+EGWVEQDP  +L+ V  C+E+ +++   L  NP DI
Sbjct: 74  LAFHQVEFQSIYPKEGWVEQDPKTLLSSVYQCMEQTLQSCKELNINPTDI 123



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 509 TNASRTMLMNIENLNWDPLLLRFFEVPKSVLPD 607
           TNASRTML+N++   WDP L +F    K  L D
Sbjct: 295 TNASRTMLLNLKTQEWDPYLCKFLVTSKQRLWD 327


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 302 FVWHRVKKLVNSGRCSISSQTIALYKGFPVPCSQTIVVS 186
           F W R+  L  S R ++S +   +Y+ FP+P   +++ S
Sbjct: 459 FKWERLDLLSGSNRLALSIKVHEVYRAFPIPEKDSLLAS 497


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = -3

Query: 287 VKKLVNSGRCSISSQTIALYKGFPVPCSQTIVVSLWFVTPTAIISSGFPPNATKFSTAFS 108
           +KKL+N     +       +    + C Q  +V++WF     ++ S FPP   + +   +
Sbjct: 80  IKKLINM---MLDVTWTGAHGDHSITCQQCEMVAVWFKLAHMLLESVFPPG--EVAAEDT 134

Query: 107 MHVLTTANIAYGSCSTQ 57
           +H +   +I  GS S++
Sbjct: 135 LHAVAYGSIVRGSSSSK 151


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 302 FVWHRVKKLVNSGRCSISSQTIALYKGFPVPCSQTIVVS 186
           F W R+  L  S R ++S +   +Y+ FP+P   +++ S
Sbjct: 325 FKWERLDLLSGSNRLALSIKVHEVYRAFPIPEKDSLLAS 363


>SB_21323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 366 VKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWN--LTGGPNGGKHVTDV 509
           ++L + + N DP+ ++ K+G   FG++D W   N  +    N  K++T +
Sbjct: 24  LQLAYSAFNPDPLGHSSKEGPTHFGSLDLWAFCNTFILQSENYRKNITRI 73


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 82   ILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWL-DIE 258
            +L V+  C+      L A  G+ E       +  R T   W  G   P Y+A  WL D E
Sbjct: 1457 LLIVITVCVVILSVVLTAKSGSTESPAPSSTSLNRFTERDWFSGKFSPRYSAARWLSDTE 1516

Query: 259  HL 264
            +L
Sbjct: 1517 YL 1518


>SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)
          Length = 141

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 186 RNNYSLGTRHRETFVQRNCLAGYRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSA 365
           RNN S  T    T+ + N +  +++    D+ L       R   Y++   G  LS     
Sbjct: 17  RNNDSENTWAVFTYDESNTICLHKSGKEYDEFLAEFDESDRAYAYVRIETGDELSRRAKF 76

Query: 366 VKLRWLSDNVDPVKNA 413
             + W+  +V P+K A
Sbjct: 77  AFITWVGPSVSPLKKA 92


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 529 HCSRCIGTSVTCFPPFGPPVKFHMIQQSTV 440
           H +   GT +    PFG PV  HM+ + T+
Sbjct: 269 HANNIDGTGIVGSHPFGIPVNVHMVSKPTL 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,432,865
Number of Sequences: 59808
Number of extensions: 520283
Number of successful extensions: 1433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)