Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060761.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical pr... 104 5e-23
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 35 0.062
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.33
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 32 0.33
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 2.3
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 29 2.3
U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical... 28 5.4
Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81491-7|CAI46570.1| 184|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81051-10|CAE17730.1| 206|Caenorhabditis elegans Hypothetical p... 27 9.4
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical
protein R11F4.1 protein.
Length = 502
Score = 104 bits (250), Expect = 5e-23
Identities = 51/120 (42%), Positives = 71/120 (59%)
Frame = +1
Query: 10 VAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRE 189
V HQ E+ Q FP GWVE DP + V +CI K +E L LG + ++I +VGV NQRE
Sbjct: 27 VTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKTIEKLENLGISADEIKSVGVANQRE 86
Query: 190 TTIVWEQGTGKPLYNAIVWLDIEHLPLLTSFLTRCQTKQETKIT*SHYVVFHSHLTLVLL 369
T+IVW++ TGKPLYNAIVWLD L ++R +K + + + H + + + L
Sbjct: 87 TSIVWDKETGKPLYNAIVWLDTRTSSLADEAISRTASKSKDEFRAKTGLPIHPYFSALKL 146
Score = 77.4 bits (182), Expect = 9e-15
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +3
Query: 255 RTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCR 434
RTSS D+ + +K++++ K GLP+ PYFSA+KL+WL NV VK A G
Sbjct: 109 RTSSLADEAISRTASKSKDEFRAKT--GLPIHPYFSALKLKWLFQNVPEVKKAYADGNLM 166
Query: 435 FGTVDCWIIWNLTGGPNGGKHVTDV 509
FGTVD W+IW LTG +VTDV
Sbjct: 167 FGTVDTWLIWKLTGA-----YVTDV 186
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +2
Query: 467 LDRWSKWREACH*CT---NASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFTD 637
+D W W+ T NASRT+L+++ W L FF++P +LP+I+SS +
Sbjct: 170 VDTWLIWKLTGAYVTDVSNASRTLLLDLHKRKWSTQLCEFFDLPIEILPEIRSSAEVY-G 228
Query: 638 TLLDGPLKGVPIAGCL 685
GPL+GVP++GCL
Sbjct: 229 HFDKGPLEGVPLSGCL 244
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 34.7 bits (76), Expect = 0.062
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Frame = +3
Query: 105 HRKSSGEFGGIGGKSRGYNSSWSHKPKRNNYSLGTRHRETFVQRNCLAGYRTSSTIDKLL 284
HR S GG+ + YN + YS + T + + +SST +
Sbjct: 373 HRAGSFARGGMMARQMAYNDD---SKDEDAYSEASSEDSTIASKKEDSPGASSSTPPSIP 429
Query: 285 DTVPNKTRNKNYLKPLCGLPLSPYFSAVKLRWLS-DNVDPVKNAMKKGTCRFGTVD 449
DT N + P G P+ P L W S N +++ ++KG ++ D
Sbjct: 430 DTASNFRQGSGEQTPRVGSPVFPVIQKKTLPWRSKTNAQDIEDFIQKGRFKYFNYD 485
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 524 FSMHWYISDMLPAIWTTCQVPYDPTINSTKTTGTLLHGILYR 399
FS+H + D+ ++ C V D +IN+TKT TL +++R
Sbjct: 217 FSIHSAVLDIEQKVFYNCPVAVDNSINATKTPITLPFEVVFR 258
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 524 FSMHWYISDMLPAIWTTCQVPYDPTINSTKTTGTLLHGILYR 399
FS+H + D+ ++ C V D +IN+TKT TL +++R
Sbjct: 217 FSIHSAVLDIEQKVFYNCPVAVDNSINATKTPITLPFEVVFR 258
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 114 SSGEFGGIGGKSRGYNSSWSHKPKRNNYSLG 206
S G +GG G + RGY + + PKR Y G
Sbjct: 519 SRGRYGGGGFQKRGYGGNDNFAPKRPRYDNG 549
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 192 CFSLVCDSNCYYILWISPQCHQILHCFFYARF 97
CF C++N Y+ L + H L+C F F
Sbjct: 603 CFCQNCNNNTYWCLRTKNETHNFLYCEFVTEF 634
>U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical
protein C55B6.1a protein.
Length = 523
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 61 VEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAI 240
VE +P + I+KA E L P + VG+ QR + ++W + T K I
Sbjct: 52 VEIEPEQLFLQFLRVIKKAYETLP-----PNAHVDVGLCTQRNSIVLWNKRTLKEETRII 106
Query: 241 VWLD 252
W D
Sbjct: 107 CWND 110
>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
protein T05H4.3 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 518 SRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFTDTLLDGPL 658
S T+L ++ +LN DP++ + P I SFR F ++L D P+
Sbjct: 202 SLTILSSLRSLNLDPVISKSTVAPNLFFAWIAHSFR-FIESLDDDPI 247
>Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical
protein F54D5.2 protein.
Length = 426
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 470 QVPYDPTINSTKTTGTL--LHGILYRINIVTKPSQLNSTKVR*EWKT 336
++ DP+IN + + G LY + VTK + ++ K R E+K+
Sbjct: 3 EIAIDPSINQDMSASEIYRFEGTLYTLPFVTKNNDISWNKSRDEYKS 49
>Z81491-7|CAI46570.1| 184|Caenorhabditis elegans Hypothetical
protein D1086.11 protein.
Length = 184
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 231 QRNCLAGYRTSSTIDKLLDTVPNKTRNKNYL---KPLCGLP 344
+RNC A + S ID + +P T +Y+ K CG+P
Sbjct: 125 KRNCAADNKGFSNIDYMCGVIPPPTMLPDYVSWYKAKCGIP 165
>Z81051-10|CAE17730.1| 206|Caenorhabditis elegans Hypothetical
protein C55A6.11 protein.
Length = 206
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 207 TRHRE--TFVQRNCLAGYRTSSTIDKLLDTVPNK 302
TRH+E TF+ +NC +G++T L + V N+
Sbjct: 38 TRHKELRTFMYKNCTSGFKTCFQQIMLTEIVRNE 71
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 303 FCLAPCQEACQ*WKMFYIQPNNCVVQRFPCALFPNY-SC---FSLVCDSNC 163
FCL CQ ACQ NC +Q PCA+ + +C FSL ++ C
Sbjct: 825 FCLPACQNACQ---------QNCPLQVEPCAMSGSQCNCSTGFSLCGNNQC 866
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,948
Number of Sequences: 27780
Number of extensions: 401099
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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