Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060761.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    99   2e-21
At5g61560.1 68418.m07725 protein kinase family protein contains ...    29   2.9  
At5g61550.1 68418.m07724 protein kinase family protein contains ...    29   3.8  
At3g44810.1 68416.m04828 F-box family protein contains F-box dom...    29   3.8  
At1g55950.1 68414.m06417 hypothetical protein  contains Pfam pro...    29   3.8  
At1g14070.1 68414.m01664 xyloglucan fucosyltransferase, putative...    29   3.8  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family pr...    28   6.6  
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin...    27   8.8  
At3g30520.1 68416.m03863 hypothetical protein                          27   8.8  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 41/59 (69%), Positives = 49/59 (83%)
 Frame = +3

Query: 333 CGLPLSPYFSAVKLRWLSDNVDPVKNAMKKGTCRFGTVDCWIIWNLTGGPNGGKHVTDV 509
           CGLP+S YFSA+KL WL +NVD VK+A+KKG   FGT+D W+IWN+TGG NGG HVTDV
Sbjct: 136 CGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIWNMTGGINGGLHVTDV 194



 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
 Frame = +1

Query: 10  VAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVENLVALGGNPE-DIIAVGVTNQR 186
           VA HQ E  Q +P+ GWVE DP  IL  VK CI KA++   A G N +  + A+G+T+QR
Sbjct: 30  VASHQVEFTQFYPEAGWVEHDPMEILESVKVCIAKALDKATADGHNVDGGLKAIGLTDQR 89

Query: 187 ETTIVWEQGTGKPLYNAIVWLD 252
           ETT+VW + TG PL+ AIVW+D
Sbjct: 90  ETTVVWSKSTGLPLHKAIVWMD 111



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +2

Query: 509 TNASRTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFTDTLLDGPLKGVPIAGCL 685
           TNASRTMLMN++ L+WD   L+   +P  +LP I S+     +     P+ G+ IAGCL
Sbjct: 195 TNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSNSEVIGEICKGWPIPGIKIAGCL 253


>At5g61560.1 68418.m07725 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 796

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 124 SPLLFLCTF*LRPILHTDLAPPN-LLEENAVLTLFD 20
           S L FL T   RPI+H DL P N LL+ N V  + D
Sbjct: 540 SALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGD 575


>At5g61550.1 68418.m07724 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain;
           protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
          Length = 845

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 124 SPLLFLCTF*LRPILHTDLAPPN-LLEENAVLTLFD 20
           S L+FL     RPI+H DL P N LL+ N V  L D
Sbjct: 595 SALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGD 630


>At3g44810.1 68416.m04828 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 521 RTMLMNIENLNWDPLLLRFFEVPKSVLPDIKSSFRGFTDTLL 646
           RT+     NL++D  ++   EV +  + D++ SFR F D  L
Sbjct: 40  RTLFAVRRNLDFDDSIISHPEVGEQNMDDVQESFRDFVDKRL 81


>At1g55950.1 68414.m06417 hypothetical protein  contains Pfam
           profile: PF04504 protein of unknown function, DUF573
          Length = 203

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 201 LGTRHRETFVQRNCLAGYRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSPY 356
           +  +++ +  +  CL   +  ST+ +LL+  P   R K YL+PL   P   Y
Sbjct: 1   MAKKNKRSQQKNKCLKPEKDPSTVKRLLEDPP---RKKRYLQPLENPPTESY 49


>At1g14070.1 68414.m01664 xyloglucan fucosyltransferase, putative
           (FUT7) nearly identical to SP|Q9XI81 Probable
           fucosyltransferase 7 (EC 2.4.1.-) (AtFUT7) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from (Arabidopsis thaliana)
          Length = 509

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -2

Query: 264 KMFYIQPNNCVVQRFPCALFPNYSCFSLVCDSNCYYI--LWISPQCHQILHCFFYARFNY 91
           KMF+ Q +  +V + P           LV  SN Y+I  LW++P     L   F  +   
Sbjct: 219 KMFFCQKDQSLVDKVPW----------LVVKSNLYFIPSLWLNPSFQTELIKLFPQKDTV 268

Query: 90  GQYCIRILLHPT 55
             +  R L HPT
Sbjct: 269 FYHLARYLFHPT 280


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 554 WDPLLLRFFEVP-KSVLPDIKSSFRGFTDT 640
           WD  L RF E P +SV+  +K S+ G  +T
Sbjct: 403 WDDALCRFIEAPDESVMEILKISYDGLEET 432


>At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family
           protein contains Pfam profile: PF03254 xyloglucan
           fucosyltransferase
          Length = 907

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 183 LVCDSNCYYI--LWISPQCHQILHCFFYARFNYGQYCIRILLHPT 55
           LV +SN Y+I  LW+ P     L   F  +     +  R L HPT
Sbjct: 253 LVFNSNLYFIPSLWLIPSFQSELSKLFPQKETVFHHLARYLFHPT 297


>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
           T2a [Homo sapiens] GI:2981198; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 541

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 177 KPKRNNYSLGTRHRETFVQRNCLAGYRTSSTIDKLLDTVPNKTR 308
           K  +N  S+GT H E     N +        ID +  T+P++ R
Sbjct: 448 KDIQNKSSMGTEHGEILDGNNLVVNTEEGEMIDDVSSTMPSRKR 491


>At3g30520.1 68416.m03863 hypothetical protein 
          Length = 397

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 173 TPTAIISSGFPPNATKFSTAFSMHVLTTANIAYG 72
           TP  +     PPNA  + T  + H  T  N+ YG
Sbjct: 306 TPPNVAQCRTPPNAPHWGTPPNAHGTTPTNVQYG 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,272
Number of Sequences: 28952
Number of extensions: 372133
Number of successful extensions: 1194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)