Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060759.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 35 0.010
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.013
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.013
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 35 0.013
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.017
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.022
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.022
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.039
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.051
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.089
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.36
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.36
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 29 0.48
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.63
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 28 1.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 1.1
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.9
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 1.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.5
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 2.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 4.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 5.9
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 7.8
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
G AFV F + D ++A++T++G+ LD RE+ VQ AR
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 239 RSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
R + RGF FV F D A++ M+G+ + L V+ A
Sbjct: 251 RGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
GFAFV +R+ AEEA+++++G +DGR + V A
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 31.9 bits (69), Expect = 0.089
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
E+RG+ FV F DA+ A + + L GR LR+ A
Sbjct: 44 ENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 224 YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
++H QR S+GF ++++ A AL+ M+G L GR +RV
Sbjct: 368 FVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 144 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 254
L V N+ + T ED++ +FE G++ +++ RD R
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR 378
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 150 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 245
V L R T +L FE+ G V D I RD+
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDK 275
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
S GF FV F ++ A A+ M+G +LDG +L ++++ G
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQG 703
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+ +RGFAF F R+A A+ + L GR L +Q A
Sbjct: 758 RSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 156 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
NLTY +DL+ +F G++ +++P D+ T
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKT 360
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RG AF F+ +A+ + T++G ++GR LRV+ R
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKR 279
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 242 SVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+V + S G+A+V F D E+ALD ++ ++ GR R+ ++
Sbjct: 115 AVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ 157
Score = 31.9 bits (69), Expect = 0.089
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+S+GF FV + +A +A+ M+ RML G+ L V +A+
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 150 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 254
V NL++ TT E + +F +CGE+ I + DR+T+
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTK 70
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
GF FV +FE +DA ++L + LD R +R +
Sbjct: 74 GFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
V K SRGF F+ F +A A+D ++ + GR L VQ A+
Sbjct: 137 VTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMAR 370
+ SR FAFV + + RDAE+A + GR L+ G LRV+ A+
Sbjct: 44 RTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
S+ V N+ Y TPE+L+ F CG V + I D++T
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFT 92
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.1 bits (72), Expect = 0.039
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 150 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRKVEDSPS*GFSSVVMLKK 308
V NL++ T +DL F CG++ I +P D + +++ FS + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.7 bits (71), Expect = 0.051
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
S+GF F F DAE A+ +DG+ G +L Q A G
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVG 389
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.9 bits (69), Expect = 0.089
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 236 QRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+ V +S G+AFV F RD + A G ML+GR + V + R
Sbjct: 133 RNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVER 177
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+GFA+++F + ++AL + +M +GR LR+ A+
Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAK 347
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 114 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
P R DG + + L + TT + LR FE+ GEV D + RD T
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTT 200
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGR 346
KE G VRF +AE + M GR DGR
Sbjct: 294 KEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +2
Query: 194 RFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RF ++R YL + + ++GFAFV +++R A +A D +DG + LR + ++
Sbjct: 224 RFGGIQRV--YLAKDKETGR-AKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 279
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 515 PLDSLSQSESDCGNGCGYDC---ASNY 444
PLD L DCG+ CGY+C A NY
Sbjct: 56 PLD-LKLFRWDCGSNCGYECEITAENY 81
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 364
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 245
D V L V NL ++ E L+ F+R G+V + IP D+
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDK 127
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 159 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 52
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 281 FFERRDAEEALDTMDGRMLDGRELRV 358
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 272 FVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
++ + + DA A+ +DG + DGR LR A YG
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLR---ASYG 200
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K GF FV + RDA + ++ G+ G + V+ AR
Sbjct: 34 KLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPAR 73
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
+S+GFAF+++ ++R A+D M L R +RV
Sbjct: 70 KSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 476 NGCGYDCASNYDGGNETWTCACD 408
+GC + Y+GG +TW C+ D
Sbjct: 89 DGCNDLVPNVYEGGYKTWECSLD 111
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 354 RSSLPSNIRPSIVXXXXXXXXXSKNLTKANPLLSLCTDLWEC 229
R+ +PSN P + K +TK N L D++EC
Sbjct: 39 RNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQSLLSLDIFEC 80
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 261 LLSLCTDLWECRYHQLLRTFRKRGVSLQAS 172
L+ C +W+C+ Q + F +RG+ + S
Sbjct: 228 LILACDGIWDCKSSQQVVEFVRRGIVARQS 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,237
Number of Sequences: 5004
Number of extensions: 45603
Number of successful extensions: 160
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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