Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060759.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 41 8e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 41 0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.002
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.004
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 37 0.013
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 36 0.023
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 36 0.031
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.094
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 33 0.16
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 33 0.16
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 33 0.22
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.22
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.29
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 32 0.38
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 0.50
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.87
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.87
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 1.2
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.2
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 2.0
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 2.7
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.7
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 29 2.7
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 29 2.7
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 2.7
SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.5
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085) 29 3.5
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 29 4.7
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 6.2
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 28 6.2
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 28 6.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 8.1
SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7) 28 8.1
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 28 8.1
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 93.1 bits (221), Expect = 2e-19
Identities = 47/91 (51%), Positives = 55/91 (60%)
Frame = +3
Query: 111 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRKVEDSPS*GFSS 290
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T + F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 291 VVMLKKPWTRWTDECWTAGNFAFRWRDMVAP 383
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
V + GFAF F +RRDAE+A+ +DGR + G+ +RV++A+
Sbjct: 63 VARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAK 104
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGFAFV F +++ E+A++ +DG+ DGR ++V AR
Sbjct: 270 RGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQAR 306
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGF FV F + ++A+D DG LDGR ++V A+
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQ 86
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
V + GFAF F +RRDAE+A+ +DGR + G+ RV++A+
Sbjct: 33 VARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 361
SRGFA+V + + + E+AL MDG +DG+E+ VQ
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGF FV F + + E+A+D DG+ LDGR ++V A+
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAK 173
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGF FV F + + E+A+D DG+ DGR ++V A+
Sbjct: 45 RGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQ 81
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
FAFV F + RDAE+A+ DG DG +RV+ R G
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGG 338
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARY 373
+S+GFAF+ F R DA A++ + G D L V+ A+Y
Sbjct: 220 QSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWAKY 259
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 150 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
V NL Y T DL +VFER G+V + I RD+ TR+
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRE 49
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+ESRG AF+ F +R+ A+ A+ ++ + + GR ++ +A+
Sbjct: 48 RESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIAK 87
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
V + GFAFV + + RDAEEA+ +DG + R +RV+ +
Sbjct: 35 VARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RG+ FV F + RDAE+A+ ++GR L G + V+ ++
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSK 758
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
ESRGF FV + + A++ L M G +DGR++R+ A
Sbjct: 325 ESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
SRGF FV F DA+ A+ +++G+ + GR L++
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K+ + +AFV F ER A +A++ DG+ +DG ++ +A+
Sbjct: 359 KKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAK 398
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RG+AF+ + RD A DG+ +DGR + V + R
Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVER 83
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 352
+S+GF FV F +AEEA++ ++G+ + GR L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F +A +A+ M+GR+L + L V +A+
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQ 288
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+S+GF FV F R DA +A+ MD + G++++ A
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGF FV F D A+D M+ L GR +RV +A+
Sbjct: 46 RGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAK 82
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 248 HKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
HK+ +G + F ++D ++AL +DG+ L G+ +R+
Sbjct: 199 HKQKQGEGVIEFATKKDLKKALRKLDGKELKGKRIRL 235
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
++ R + FV F +R A +A+D ++G +DG +L V +A
Sbjct: 32 RKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 248 HKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
HK+ +G + F +RD + AL +DG L+G+ +R+
Sbjct: 129 HKQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 239 RSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
+ V E RG FVRF +R +A+ A+D ++ + L G +++
Sbjct: 146 KDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+S G+AFV + DA +A+ M+G L + L+V AR
Sbjct: 66 QSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
S+G+ FV+F E A+ A++ M+G L GR L++
Sbjct: 282 SKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 177 PEDLRRVFERCGEVGDIYIPRDRYTRK 257
P DL F + G+V D+ I DR +R+
Sbjct: 159 PRDLEEFFSKVGQVSDVRIISDRNSRR 185
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 236 QRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+R + SRGF FV + D E+ DG +GR L+V A
Sbjct: 75 EREQPERSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K+S+G V+F +A A++ + G+ML R LRV+M R
Sbjct: 222 KKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVRMDR 261
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
SRGFAFV + +AE+ +GR ++G +RV
Sbjct: 246 SRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
S GF FV + DA++A+D ++G + + L+V +R G
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPG 126
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 111 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 239
RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+ SRGF FVRF + DA+ L T + GR V++ R
Sbjct: 153 RRSRGFGFVRFKKDEDAKNVLST--SHRIQGRLCEVRLPR 190
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
D L V L TT E LR FE GE+ D+ + D T+K
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKK 53
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 144 LKVDNLTYRTTPEDLRRVFERCGEVGDI 227
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
+L VDNL+ T D+ R F G+V ++I DR T K
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
++ + +GFAFV + A+ AL+ M+G +L GR ++V
Sbjct: 138 LNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
D S+ + NL + E LR +F CG V + + RDR T
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKT 93
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 230 HSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
H +R +++R FV F A++A+D M+G + +RV MAR
Sbjct: 133 HVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMAR 179
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
GF FV F +A +A + ++G ++DGR++ V +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 138 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 245
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 479 GNGCGYDCASNYDGGNETWTCACDRNDSCMAMRG 378
GN C C + G N C C N +C A+ G
Sbjct: 652 GNACDRPCPAGKHGANCGLKCLCANNGTCNAITG 685
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 245 VHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARY 373
++KE +GF F+R R AE A +D GR LRV+ A +
Sbjct: 83 INKE-KGFGFIRLDTRLHAEAAKAGLDMATRKGRTLRVRFATH 124
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 108 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRKVED 266
G R V L V + +DLR +FE G++ ++ I +D+YT + +D
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKD 212
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GFAF+ F ++ A++ M+G+ L R + V A
Sbjct: 141 SKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 168 RTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
R ED+R FE+ G + D+++ +D+ T++
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKATKE 62
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGR 331
KE+RG +V+F + A A + MDGR
Sbjct: 61 KENRGVCYVKFVKASSAALACEEMDGR 87
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
D + L V L+Y TT E L+ F + GE+ + I D T
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALT 66
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = -1
Query: 500 SQSESDCGNGCGYDCASNYDGGNETWTCACD---RNDSCMAMRGDHIAPSEREVPCR 339
++ E G + YDG T D ND + M G H AP R++ C+
Sbjct: 314 AKEELSKSRGKSHPFDEQYDGDRNTQIALMDMPHENDVVVEMNGRHAAPRHRKIRCQ 370
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 413 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 312
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 646
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 361 LNAKFPAVQHSSVHRVQGFFSITTLEKPYEGESSTFLVYRSLGM 230
L K +QH++V + + + L+ P + + +L RSLGM
Sbjct: 74 LKIKLEGLQHNAVKAIVDYLYTSCLDVPADSVLNVYLAARSLGM 117
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 239
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 479 GN-GCGYDCASNYDGGNETWTCACDRNDSC 393
GN GCGY C NY GN CD N C
Sbjct: 171 GNYGCGYGCDGNYGCGN-----GCDGNYGC 195
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
+ F+ + + RDAEEA+ + R L G + V+ R G
Sbjct: 41 YGFIEYEDPRDAEEAMRRENNRKLFGSRIVVEYVRSG 77
>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
Length = 292
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGR-MLDGRELRVQMA 367
+AFV+F+ + A A + ++G+ ++DG L+VQ A
Sbjct: 80 YAFVKFYSAKAALRAKEEVNGKWLIDGNILKVQFA 114
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 311 GLLQHHDARKTLRRRILYFPCVPISGNVDITNFSAPFENAA 189
G L+ H T RRILY VP+ GN IT P++ AA
Sbjct: 137 GFLRFHVYFTT--RRILYELGVPLPGNSPITQKGNPYKKAA 175
>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 338 PTFVRPSCP--GLLQHHDARKTLRRRILYFPCVPISGNVDITNFSAPFENAA 189
PTF P G L+ H T RRILY VP+ G+ T P++ AA
Sbjct: 142 PTFATPPSVIRGFLRFHVYDTT--RRILYELGVPLPGDSPFTQKGNPYKKAA 191
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
F FV+F + A+EA+ GR+++G+++ V++
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 144 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
L V + Y + + LR+ F + GE+ + + +DR T+K
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKK 49
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 355
S+G+AFV F A+ A DTM M+ GR L+
Sbjct: 138 SKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+G+ F + ++ A A+ ++G L+GR LRV A
Sbjct: 66 KGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSA 101
>SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)
Length = 268
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 210 GEVGDIYIPRDRYTRKVEDSPS*GFSSVVMLKKPWTRWTDE 332
G +G++ +PR RY+ + P ++V LK W +D+
Sbjct: 74 GPLGNLSLPRRRYSLSLVVDPRDRITAVEALKHEWVSGSDD 114
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 515 PLDSLSQSESDCGNGCGYDCASNYDGGNETWTCACDRNDSC 393
P L S C +GC +C+ N +G + + C+C C
Sbjct: 1346 PSSLLELSTCGCKSGCQRNCSFNNNGLSCSEACSCIAGTDC 1386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,630
Number of Sequences: 59808
Number of extensions: 342647
Number of successful extensions: 958
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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