Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060759.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 76 2e-14
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 76 2e-14
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 42 3e-04
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 42 3e-04
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 42 3e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 42 3e-04
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 40 0.002
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 40 0.002
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 40 0.002
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.009
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.009
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.009
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.009
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.027
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 36 0.027
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.027
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.036
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 35 0.063
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.063
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 34 0.083
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 34 0.083
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.083
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 34 0.083
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.083
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 34 0.083
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 34 0.083
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.11
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.14
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 33 0.19
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 33 0.25
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 32 0.33
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.58
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.58
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.8
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 30 1.8
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 29 2.4
AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical ... 29 2.4
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 3.1
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 3.1
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 3.1
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 29 3.1
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 4.1
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 4.1
U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein... 28 5.4
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 28 5.4
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 5.4
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 28 7.2
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 7.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 7.2
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 7.2
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.2
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 7.2
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 28 7.2
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 28 7.2
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 28 7.2
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 7.2
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 7.2
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 7.2
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 7.2
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 7.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 7.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 7.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 7.2
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 27 9.5
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 76.2 bits (179), Expect = 2e-14
Identities = 30/49 (61%), Positives = 42/49 (85%)
Frame = +3
Query: 111 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQ 58
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 PNDA*RLTPRFRKVRRSW*YLHSQRSVH-KESRGFAFVRFFERRDAEEALDTMDGRMLDG 343
PND R R+ + +H R + ++S+GF FVRF+ERRDAE ALD DG+++DG
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 344 RELRVQMARY 373
RELRV +A+Y
Sbjct: 88 RELRVTLAKY 97
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 76.2 bits (179), Expect = 2e-14
Identities = 30/49 (61%), Positives = 42/49 (85%)
Frame = +3
Query: 111 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQ 58
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 PNDA*RLTPRFRKVRRSW*YLHSQRSVH-KESRGFAFVRFFERRDAEEALDTMDGRMLDG 343
PND R R+ + +H R + ++S+GF FVRF+ERRDAE ALD DG+++DG
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 344 RELRVQMARY 373
RELRV +A+Y
Sbjct: 88 RELRVTLAKY 97
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
+GFAF+R R AE A + +DGR++ GR++RV+ A +G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 376
+GFAF+R R AE A + +DGR++ GR++RV+ A +G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 251 KESRG--FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K RG FAFV F + RDAE+A+ DG DGR +RV+ R
Sbjct: 41 KSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 251 KESRG--FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K RG FAFV F + RDAE+A+ DG DGR +RV+ R
Sbjct: 41 KSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMAR 370
GFAFV F + RDAE+A +DG+ ++G +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMAR 370
GFAFV F + RDAE+A +DG+ ++G +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMAR 370
GFAFV F + RDAE+A +DG+ ++G +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
RGFAF+ F E A+ A++ M+G +GR LRV +A
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGFAFV F E A+ A+D +G +GR LRV +A+
Sbjct: 45 RGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S G+A+V F + DAE ALDTM+ ++ GR +R+ ++
Sbjct: 97 SLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ 134
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+GF FV F ++ A +A++ ++ +L+G + ++ + R
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S G+A+V F + DAE ALDTM+ ++ GR +R+ ++
Sbjct: 97 SLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ 134
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+GF FV F ++ A +A++ ++ +L+G + ++ + R
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCR 314
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S GF FV+F+ DA+ AL M G +LDG L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 156 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
NL Y T +DL+ +F++ GEV ++ + D+ T
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKT 316
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
RGFAFV F E A+ A++ ++G +GR LRV A
Sbjct: 47 RGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 194 RFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
RF ++R+ W V + GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 194 RFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
RF ++R+ W V + GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 194 RFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
RF ++R+ W V + GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S G+A+V F + DAE A+DTM+ L G+ +R+ ++
Sbjct: 72 SLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 242 SVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+V +S+GF FV F +AE A+ + ++G +L++ + R
Sbjct: 246 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S G+A+V F + DAE A+DTM+ L G+ +R+ ++
Sbjct: 72 SLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 242 SVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+V +S+GF FV F +AE A+ + ++G +L++ + R
Sbjct: 186 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 296 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 333
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S G+A+V F + DAE A+DTM+ L G+ +R+ ++
Sbjct: 72 SLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 242 SVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+V +S+GF FV F +AE A+ + ++G +L++ + R
Sbjct: 246 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 356 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 393
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 185 LTPRFRKVRRSW*YLHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 361
L P F K + W + SRG+AFV + + DA A T DG + G+ L+V
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
Query: 362 MA 367
++
Sbjct: 276 VS 277
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
K+ + +AF+ F ER D +A++ +G+ L+G + +A+
Sbjct: 407 KKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLAK 446
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 34.7 bits (76), Expect = 0.063
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
S+ + N+ + +T E++ F+ CG++ IP+D++T+K
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKK 94
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 34.7 bits (76), Expect = 0.063
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+ +G+ FV + R DAE A+D M+G L R +R A
Sbjct: 171 KGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GF FV +DAE A + G M++GR++ V A
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 233
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 61 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 71 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 174 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+AFV F + A +AL TM+ R+L RE++V A
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 142 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GF FV +DAE A + G M++GR++ V A
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 129 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 233
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.083
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
RGF FV F DA A+D M+ L G+ +RV AR
Sbjct: 52 RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 260 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
RG+ +V + DAE+++ MDG +DG + V+M
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGREL 352
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGREL 352
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGREL 352
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
S+ + N+ + +T E++ F+ CG + IP+D++T+K
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKK 100
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
S+ V N+ +++T ++ F CG+V + IP+D++T
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFT 83
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 242 SVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+V +S+GF FV F +AE A+ + ++G +L++ + R
Sbjct: 183 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 293 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 330
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
GF FV F ++RDA++A+ ++G+ L G + ++ R
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPR 71
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 251 KESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
++S+G+ FV F +++AE A+ M+G+ + R +R A
Sbjct: 173 QKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
+++ +AFVR+ ++ A +A+ M+G+ + G ++R R
Sbjct: 270 KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGR 308
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 263 GFAFVRFFERRDAEEALDTMDGRMLDGRELR 355
GF FV ++ R DAE AL + +D R +R
Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIR 109
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 254
+L V NL+Y T + + +F R G+V + + DR+ +
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKK 75
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 141 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 151 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 141 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
S+ V N+ Y T E++ + F CG V + I DR++
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFS 115
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
SRGF F+ F DA A D + LDG ++RV +
Sbjct: 116 SRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 245 VHKES---RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 370
VH E+ RG+AF+ + ++ + A DG +DG+ L V R
Sbjct: 136 VHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYER 180
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARY 373
+S+G+ FV F + D A+ MDG+ + R ++++ + +
Sbjct: 242 KSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAW 281
>AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical
protein W08E12.3 protein.
Length = 140
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 479 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 318
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNSCPPQPIFIQPS 100
>AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.4 protein.
Length = 141
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 479 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 318
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.5 protein.
Length = 141
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 479 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 318
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Frame = -1
Query: 482 CGNGCGYDCASNYDGGNETWTCACD---RNDSCMAMRGDHIA-PSEREVPCRPTFVRPSC 315
C NG CAS DG +TC CD +C M I P C+P F C
Sbjct: 383 CNNG---KCASTIDGITTNYTCTCDDGWTGTNCDTMIDFCIPNPCSYNSTCKPKFKGYDC 439
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GF FV DA+ A +G ++GR + V +A
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GF FV DA+ A +G ++GR + V +A
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+GF FV DA+ A +G ++GR + V +A
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 281 FFERRDAEEALDTMDGRMLDGRELRVQMARY 373
+ ++ E A + +DG L+GRE++V+ AR+
Sbjct: 234 YIKKESVELACNILDGANLNGREVKVEEARF 264
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 482 CGNGC--GYDCASNYDGGNETWTCACDR 405
C NGC GY C SN G TCA R
Sbjct: 197 CSNGCPTGYSCNSNTGNGYCCATCASGR 224
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 117 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 117 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 251
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 497 QSESDCGNGCGYDCASNYDGGNETWTCACDRNDSC 393
Q +++CG GCG C+ GG + C+ SC
Sbjct: 2125 QQQNNCGGGCGGGCS----GGGNSCGGGCNSGGSC 2155
>U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein 5
protein.
Length = 447
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 192 RVFERCGEVGDIYIPRDRYTRKVEDSPS*GFSSVVMLKKPWTRWTDECWTAGNFAFRW 365
R F+R E DI DR++ + S GFS+++M + +CW F W
Sbjct: 10 RKFQRSAESNDI---ADRFSYQYT-STLLGFSAIMMAASQYVGRPIQCWVPAQFTRTW 63
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 248 HKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
++E+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 163 NRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 248 HKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 364
++E+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 308 NRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 171 TTPEDLRRVFERCGEVGDIYIPRDR 245
TT EDL +F R G++ + I RDR
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDR 276
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 227 LHSQRSVHKESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
L R K GF F++F E+ DAE+ + + + GR + A
Sbjct: 126 LPPSRKDPKTCAGFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWA 172
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 171 TTPEDLRRVFERCGEVGDIYIPRDR 245
TT EDL +F R G++ + I RDR
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDR 276
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 171 TTPEDLRRVFERCGEVGDIYIPRDR 245
TT EDL +F R G++ + I RDR
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDR 207
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 81 ISILFKMSYGRPPPRIDGMVSLKVDNL 161
I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 364
S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 95 SKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 150 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRK 257
V L Y T+ + L FE+ G++ + + DR T+K
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQK 74
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
FAFV + A A ++M+G+ML GR L+V
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
FAFV + A A ++M+G+ML GR L+V
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 266 FAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
FAFV + A A ++M+G+ML GR L+V
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 515 PLDSLSQSESDCGNGCGYDCASNYDGGNETWTCAC 411
P + S + C CG D YD N + C C
Sbjct: 1005 PSEPAVLSTASCNPNCGPDAQCVYDDHNRQYRCEC 1039
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 236 QRSVHKESR--GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 367
+R HK+ + G AFV F A++ + + D ML REL V ++
Sbjct: 713 RRVTHKDGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALS 758
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 257 SRGFAFVRFFERRDAEEALDTMDGRMLDG 343
S+G FVRF ++ +A+ A+ T++G + G
Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 254 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 358
+S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 77 KSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,709
Number of Sequences: 27780
Number of extensions: 259686
Number of successful extensions: 878
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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