Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060755.seq
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 5e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 38 0.001
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.039
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.28
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.48
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.48
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.48
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.64
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.1
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 1.5
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 1.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 1.9
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 3.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.5
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 7.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.9
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.7 bits (220), Expect = 5e-20
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = +2
Query: 257 RPDWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFP 436
+ DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEE FP
Sbjct: 71 KKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFP 130
Query: 437 DYVQQGVKTMGYKEPTPIQAQGWP 508
+YV + VK +G++ PTPIQ Q WP
Sbjct: 131 NYVLKEVKQLGFEAPTPIQQQAWP 154
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQ 689
TGSGKTL+Y LPAIVHIN QP +S PI LV + ++ Q+
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPG-DGPIVLVLAPTRELAVQIQQE 214
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEXNFPD 439
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 440 YVQQGVKTMGYKEPTPIQAQGWP 508
+ ++GY++PT IQAQ P
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIP 450
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQ 689
+TGSGKT+A++LP HI +Q P+ + PIA++ + ++ F++
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPL-KTGEGPIAIIMTPTRELAVQIFRE 510
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHN---PIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWP 197
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQV 692
+TGSGKT+A+ +PA+ ++N +S+ P LV + ++ ++ +
Sbjct: 210 ETGSGKTVAFGIPALQYLNG---LSDNKSVPRVLVVSPTRELAIQTYENL 256
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVM--XPIALV 647
+TGSGKT A+I+P I+ I+ PP++E M P A+V
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 359 RNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+ + +++ G ++ NP++ +EE P + + +K + YKEP+ IQ P
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIP 281
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 33.1 bits (72), Expect = 0.039
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 374 VTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
V VSG ++ P+ F ++ Q +K GY +PTP+Q P
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIP 201
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI-NNQPPISERVMXP 635
QTGSGKT A+ LP I + NN P V+ P
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPFFAVVLAP 122
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 416 FEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
F+E D + + + +G+K PTPIQ + P
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIP 78
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQP 608
QTGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP*LC 517
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ +C
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQIC 56
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+ +TGSGKT AY++P + + Q I E AL+
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
TG GK+L++++PA++ Q P +VM + LV
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP--GKVMNMVTLV 1246
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
TG GK+L++++PA++ Q P +VM + LV
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP--GKVMNMVTLV 1246
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 29.1 bits (62), Expect = 0.64
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINN 602
+TGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 272 NPNLGVHVLPSREXFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--T 99
+P L V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 98 RHDYFSDLVEDVYLNYGFFLTQG 30
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 416 FEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
F+ N +++ V G+K+ TP+QA P
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIP 33
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 546 TGSGKTLAYILP 581
TGSGKTLAY+LP
Sbjct: 47 TGSGKTLAYLLP 58
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
+TGSGKTLA+I+P I ++
Sbjct: 84 KTGSGKTLAFIVPLIENL 101
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 543 QTGSGKTLAYILPAI 587
+TGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 546 TGSGKTLAYILPAI 587
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVH 593
+ TGSGKTLA+ +P + H
Sbjct: 165 KADTGSGKTLAFGIPILEH 183
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 338 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMG 469
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPP 611
TGSGKT+AY+ P + + P
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP 113
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 338 PYEVEEYRNKHEVTVS 385
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQP 608
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 590 HNXWQDVGQRFAGTRLXTPTKXFPDIATASLELEWAS 480
H+ D ++FA T P K PD+A S L WA+
Sbjct: 724 HSKLDDDLEKFAST--LDPIKTTPDLANDSSLLNWAN 758
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 113 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 33
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQP 608
+TGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 467 PLSLHLVAHNQENL--XLQSIE 408
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,303
Number of Sequences: 5004
Number of extensions: 46773
Number of successful extensions: 156
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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