Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060755.seq
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 2e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 51 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 43 2e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 43 2e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 34 0.13
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.5
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 30 2.0
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 29 3.6
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.6
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +2
Query: 260 PDWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPD 439
P+ + +PF KNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 440 YVQQGVKTMGYKEPTPIQAQGWP 508
+ ++ + Y +PT IQ Q P
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALP 549
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPI 614
+TGSGKT A++ PA+VHI +QP +
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPEL 585
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +2
Query: 332 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQ 499
R +EV+ YR ++TV+G V P+ FEE FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYR-NKHEVTVSGVEVHNPIQYFEEXNFPD 439
D +V QPF K+FY P + K +P E +E+R + + V G P++ + +
Sbjct: 55 DHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQL 114
Query: 440 YVQQGVKTMGYKEPTPIQAQGWP 508
+ +K Y++PTPIQAQ P
Sbjct: 115 KILDVLKKNSYEKPTPIQAQAIP 137
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +2
Query: 305 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPT 484
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 485 PIQAQGWP 508
PIQ Q P
Sbjct: 221 PIQMQVLP 228
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +2
Query: 344 EVEEYRNKHEVTVSGVEVHNPIQYF----EEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATP 195
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 356 YRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+R ++ G + PI+ ++E PD + + V +GYK+PTPIQ Q P
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIP 133
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPI 614
+TGSGKT A+ +P +V I P I
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKI 169
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 290 FXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMG 469
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 470 YKEPTPIQAQ 499
++ PTPIQ Q
Sbjct: 92 FQVPTPIQMQ 101
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQV 692
+TGSGKTLAY LP + + + P S P+AL+ + + F V
Sbjct: 117 ETGSGKTLAYSLPLCMLLRTKAP-SNPGDTPVALILTPTRELMQQVFMNV 165
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
E+Y ++ EV VSG I FEE N + V+ YK+PTP+Q P
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIP 743
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINN 602
QTGSGKT A++LP + + N
Sbjct: 756 QTGSGKTAAFLLPVMTSMMN 775
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
E+Y ++ EV VSG I FEE N + V+ YK+PTP+Q P
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIP 166
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 31.1 bits (67), Expect = 0.89
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 392 EVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGW 505
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 380 VSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
VSG I F E F + + + GY+ PTP+Q P
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALP 511
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQ 605
QTGSGKT AY+LP + + Q
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQ 544
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 338 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMG 469
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 365 KHEVTVSGVEVHNPI---QYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALP 135
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVH 593
QTGSGKTLAY+ P +VH
Sbjct: 423 QTGSGKTLAYLAP-LVH 438
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 222 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 112
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
+TGSGKTLA+ +P I HI
Sbjct: 176 ETGSGKTLAFGIPIIQHI 193
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 350 EEYRNK-HEVTVSGVEVHNPIQYFEEXNFPDY 442
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 407 IQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
I FE+ + + + V GYK+PTP+Q P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIP 907
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPP 611
QTGSGKT A+++P + I + P
Sbjct: 920 QTGSGKTAAFLIPILSRIYMEGP 942
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,151,708
Number of Sequences: 59808
Number of extensions: 344160
Number of successful extensions: 897
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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