Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060755.seq
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    31   0.034
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    25   2.3  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   4.0  
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           24   5.2  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   6.9  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 31.1 bits (67), Expect = 0.034
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 371 EVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
           +V VSG    + ++ FE     + V   V+   Y +PTPIQ    P
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIP 206



 Score = 30.3 bits (65), Expect = 0.060
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 543 QTGSGKTLAYILPAIVH-INNQPPISERVMXPIALV 647
           QTGSGKT A++LP I H ++ +  +  R   P  ++
Sbjct: 219 QTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVI 254


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 173 RRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYGFFLTQ 33
           RR+ A+  A ++F          ++   YF D+V DV L Y  +  Q
Sbjct: 59  RRVRAKSKAMTEFLPLCDVLFNVISLAGYFCDVVFDVVLGYALYERQ 105


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = -3

Query: 246 ALQRXLFSHQSLQILQ------IYCHRCQTETNYRRIC 151
           A +R   SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 245 AEHGRPDWDSVSLQPFXKNFYDPHPTVLKRSPYEVE 352
           A +G  +  + + + F KN+ D  P ++ +SPY+++
Sbjct: 23  APYGWNEQMNEAAREFLKNYPDFIPMLIGQSPYKID 58


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 323 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 415
           V++R P  V+  +  H+V    V VH P+ +
Sbjct: 139 VVRREPSAVKIAQPVHKVIAQPVHVHAPVAH 169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,165
Number of Sequences: 2352
Number of extensions: 11293
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)