Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060755.seq
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 44 8e-05
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 41 0.001
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 38 0.005
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 38 0.005
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 38 0.005
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.007
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 31 1.0
U00031-8|AAK18869.1| 201|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 30 1.8
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 1.8
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 2.4
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 2.4
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 2.4
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 3.2
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 28 7.3
Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical pr... 28 7.3
U97196-8|AAB52457.3| 191|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 9.6
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 9.6
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/82 (30%), Positives = 46/82 (56%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDY 442
DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F E P
Sbjct: 81 DWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQ 140
Query: 443 VQQGVKTMGYKEPTPIQAQGWP 508
+ + + +++PT IQ+ WP
Sbjct: 141 IHE-LLYGKFQKPTVIQSISWP 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQ 605
+TGSGKTLA++LPA+VHI Q
Sbjct: 174 KTGSGKTLAFMLPALVHITKQ 194
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +2
Query: 356 YRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+R +++ G V P++ +EE FPD V Q VK +GY EPTPIQ Q P
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIP 333
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPI---SERVMXPIALVXGAXQRVS------TNKF 683
+TGSGKT A++LP +V I + P + R + P A++ + ++ TNKF
Sbjct: 346 ETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKF 401
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDY 442
D + Q F KNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 443 VQQGVKTMGYKEPTPIQAQGWP 508
+ + ++ Y++PTPIQA P
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIP 297
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQ 689
+TGSGKT AY+ PAIVHI +QP + + P+A++ + ++ FQ+
Sbjct: 310 KTGSGKTAAYLWPAIVHIMDQPDL-KAGEGPVAVIVVPTRELAIQVFQE 357
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEXNFPD 439
D V + F KNFY + + + EV+ YR + + +TV G++ PI+ + +
Sbjct: 254 DHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNL 313
Query: 440 YVQQGVKTMGYKEPTPIQAQGWP 508
+ +K Y +PT IQAQ P
Sbjct: 314 KMMNVLKKFEYSKPTSIQAQAIP 336
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQ 689
+TGSGKTLA++LP HI +QP + E PIA++ + ++ +++
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELEEG-DGPIAVILAPTRELAMQTYKE 396
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 374 VTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
V +G +V PI F + + +++++ +KT GY PTP+Q P
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIP 198
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
++Y N V VSG V I++F E F V + V GY +PTP+Q P
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIP 171
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
QTGSGKT A++LP I HI
Sbjct: 184 QTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
++Y N V VSG V I++F E F V + V GY +PTP+Q P
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIP 155
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
QTGSGKT A++LP I HI
Sbjct: 168 QTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
++Y N V VSG V I++F E F V + V GY +PTP+Q P
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIP 152
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
QTGSGKT A++LP I HI
Sbjct: 165 QTGSGKTAAFLLPIIQHI 182
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +3
Query: 540 TQTGSGKTLAYILPAIVHINNQ 605
+QTGSGKTLA++LPA++HI+ Q
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQ 149
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +2
Query: 281 LQPFXKNFYDPHPTVLKRSPYEVEE-YRNKHEVTV------SGVEVHNPIQYFEEXNFPD 439
++P ++ Y SP +++E Y N + V S V++ P+ FE+ +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 440 YVQQG-VKTMGYKEPTPIQAQGWP 508
G ++ G+++P+PIQ+Q WP
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWP 116
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQP 608
TGSGKT+ Y+LP + + ++P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>U00031-8|AAK18869.1| 201|Caenorhabditis elegans Hypothetical
protein B0361.10 protein.
Length = 201
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 478 TDAHSSSRLAVAMSGKXLVGVXKRVPAKRWP 570
TDA R+A++ G+ L RVPA +WP
Sbjct: 83 TDAEYQQRVAMSFLGRVLDDFTTRVPATQWP 113
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +3
Query: 543 QTGSGKTLAYILPAI 587
+TGSGKTLA++LPAI
Sbjct: 113 KTGSGKTLAFLLPAI 127
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 32 PASERIHSLNKHLQLNPKNNHVW 100
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 PIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
P + F E N + +Q+ V GY + TPIQ P
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALP 373
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 PIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
P + F E N + +Q+ V GY + TPIQ P
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALP 373
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 PIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
P + F E N + +Q+ V GY + TPIQ P
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALP 373
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVH 593
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 522 KXFSWRTQTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQ 686
K R +TGSGKT A+++P + + + ++ + P A++ + + T ++
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYK 181
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 173 RRIIAEFVASSKFGTTVSTAIIPV 102
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 173 RRIIAEFVASSKFGTTVSTAIIPV 102
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINN 602
TGSGKTLA++LP + I N
Sbjct: 55 TGSGKTLAFVLPMMRMIQN 73
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 118 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGK 228
+ETV+ LE N +RL A VA E LE++ GK
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGK 107
>Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical
protein C06C6.5a protein.
Length = 359
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 258 RPCSALQRXLFSHQSLQILQIYCHRCQTETNYRRICC 148
R CS++ F+ Q Q + Y R ETNY ++ C
Sbjct: 113 RDCSSITLTAFNWQKCQPKRNYMTRTLDETNYYQLSC 149
>U97196-8|AAB52457.3| 191|Caenorhabditis elegans Hypothetical
protein B0207.2 protein.
Length = 191
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 606 VGYLCAQXLARCRPTFCRNPFXYAN*XLSRHSYGQ 502
VG + A L P C NP Y N L H Y Q
Sbjct: 21 VGTMLACALCIANPGACANPMWYTNFCLLLHDYMQ 55
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHI 596
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHI 596
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,722
Number of Sequences: 27780
Number of extensions: 258293
Number of successful extensions: 807
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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