Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060755.seq
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 91 6e-19
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 80 1e-15
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 80 1e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 6e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 61 6e-10
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 61 6e-10
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 61 6e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 57 1e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 56 2e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 9e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 47 1e-05
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 44 1e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 38 0.008
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 37 0.015
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.015
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 35 0.059
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 35 0.059
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.078
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 34 0.078
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 33 0.14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 33 0.24
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.24
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 33 0.24
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 32 0.41
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 31 0.55
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 31 0.55
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 0.73
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 0.73
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 31 0.96
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 31 0.96
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 31 0.96
At2g25460.1 68415.m03049 expressed protein 30 1.3
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.3
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.3
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 2.2
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.9
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 3.9
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 29 3.9
At2g33420.1 68415.m04096 expressed protein 29 3.9
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 29 3.9
At5g64440.1 68418.m08095 amidase family protein low similarity t... 28 5.1
At3g62760.1 68416.m07050 glutathione S-transferase, putative Glu... 28 5.1
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 28 5.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.1
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 6.8
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 6.8
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 27 8.9
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 91.1 bits (216), Expect = 6e-19
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +2
Query: 269 DSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQ 448
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 449 QGVKTMGYKEPTPIQAQGWP 508
+ VK G+ EPTPIQ+QGWP
Sbjct: 112 EEVKKAGFTEPTPIQSQGWP 131
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKFQQ 689
+TGSGKTL+Y+LPAIVH+N QP ++ PI LV + ++ Q+
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHG-DGPIVLVLAPTRELAVQIQQE 191
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +2
Query: 278 SLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGV 457
+L F KNFY PTV + +V YR + +++V G +V P++ F++ NFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 458 KTMGYKEPTPIQAQGWP 508
+G+ EPTPIQAQGWP
Sbjct: 181 AKLGFTEPTPIQAQGWP 197
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+TGSGKTLAY+LPA+VH++ QP + + PI L+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQD-DGPIVLI 243
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = +2
Query: 278 SLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGV 457
+L F KNFY PTV + +V YR + +++V G +V P++ F++ NFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 458 KTMGYKEPTPIQAQGWP 508
+G+ EPTPIQAQGWP
Sbjct: 181 AKLGFTEPTPIQAQGWP 197
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+TGSGKTLAY+LPA+VH++ QP + + PI L+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQD-DGPIVLI 243
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDY 442
D S+ +P K+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 443 VQQGVKTMGYKEPTPIQAQGWP 508
+ +K Y++PT IQ Q P
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALP 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVSTNKF 683
+TGSGKT A++LP IVHI +QP + +R PI ++ + ++ F
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPEL-QRDEGPIGVICAPTRELAHQIF 318
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +2
Query: 311 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPI 490
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 491 QAQGWP 508
QAQ WP
Sbjct: 185 QAQSWP 190
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVST 674
+TGSGKTL Y++P +H+ Q ++ M P LV + ++T
Sbjct: 203 KTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELAT 244
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +2
Query: 311 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPI 490
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 491 QAQGWP 508
QAQ WP
Sbjct: 185 QAQSWP 190
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVST 674
+TGSGKTL Y++P +H+ Q ++ M P LV + ++T
Sbjct: 203 KTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELAT 244
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +2
Query: 311 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPI 490
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 491 QAQGWP 508
QAQ WP
Sbjct: 185 QAQSWP 190
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVST 674
+TGSGKTL Y++P +H+ Q ++ M P LV + ++T
Sbjct: 203 KTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELAT 244
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDY 442
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 443 VQQGVKTMGYKEPTPIQAQGWP 508
+ +K + Y++P PIQAQ P
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALP 428
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+TGSGKTL ++LP + HI +QPP+ E PI LV
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPV-EAGDGPIGLV 474
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +2
Query: 263 DWDSVSLQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDY 442
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 443 VQQGVKTMGYKEPTPIQAQGWP 508
+ +K + Y++P PIQ Q P
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALP 561
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+TGSGKTL ++LP + HI +QPP+ E PI LV
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPV-EAGDGPIGLV 607
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +2
Query: 296 KNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKT 463
K+ PH P V SP E+ YR +HEVT +G + P FE P + + + +
Sbjct: 395 KSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLS 452
Query: 464 MGYKEPTPIQAQGWP 508
G+ PTPIQAQ WP
Sbjct: 453 AGFPSPTPIQAQTWP 467
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIV 590
+TGSGKTL Y++PA +
Sbjct: 480 KTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +2
Query: 302 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEP 481
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 482 TPIQAQGWP 508
TPIQ QG P
Sbjct: 121 TPIQVQGLP 129
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALVXG 653
TGSGKTL ++LP I+ + E +M PIA G
Sbjct: 143 TGSGKTLVFVLPMII-----LALQEEIMMPIAAGEG 173
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +2
Query: 305 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPT 484
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 485 PIQAQGWP 508
PIQ QG P
Sbjct: 171 PIQVQGLP 178
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALVXG 653
TGSGKTL ++LP I+ + E +M PIA G
Sbjct: 192 TGSGKTLVFVLPMIM-----IALQEEMMMPIAAGEG 222
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISE 620
+TGSGKT A++LP + +I+ PP+SE
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSE 383
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 356 YRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+R ++ G + P++ +EE + + V+ GYK+P+PIQ P
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP 345
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
R +TGSGKTLAY+LP + + + +S++ + P A +
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFI 125
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 359 RNKHEVTVSGVEVHNPIQYFEEXNF----PDYVQQGVKTMGYKEPTPIQAQGWP 508
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q P
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIP 173
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+ +TG+GKT+A++LPAI + PP S P +V
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIV 461
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 377 TVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQA 496
TV GV H F E N + + +T+GYK+PTPIQA
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQA 195
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISERVM 629
R +TG GKTLA++LP + + N P S+R M
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 344 EVEEYRNKHEVTVSGVEV--HNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
E E + K VT GVE + ++ F E N P+ V KT +++P+PIQ+ WP
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWP 146
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI 596
+TGSGKTLA+ +PAI+H+
Sbjct: 159 KTGSGKTLAFGIPAIMHV 176
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
TG+GKT+AY+ P I H+ P +R ALV
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALV 109
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 350 EEYRNKHEVTVSGVEVHNPIQYFEEXNFPD 439
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQPPISERVMXPIALVXGAXQRVST 674
+TGSGKTL Y++P +H+ Q ++ M P LV + ++T
Sbjct: 274 KTGSGKTLGYLIPGFMHL--QRIHNDSRMGPTILVLSPTRELAT 315
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 455 VKTMGYKEPTPIQAQGWP 508
V + G+ P+PIQAQ WP
Sbjct: 244 VYSAGFSAPSPIQAQSWP 261
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISERVMXPIALV 647
+ +TG+GKT+A++LP+I + PP S P +V
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIV 159
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 335 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPIS 617
+ +TG+GKT+A++LP+I + PP S
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTS 123
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHI---NNQPPISERVMXPI 638
TGSGKTLA++LP I I N+ PP +VM I
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVI 95
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHI---NNQPPISERVMXPI 638
TGSGKTLA++LP I I N+ PP +VM I
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVI 96
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 374 VTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP*LCLE 523
V SG +V P+ F + + D + ++ Y PTP+Q P L E
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE 188
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 374 VTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP*LCLE 523
V SG +V P+ F + + D + ++ Y PTP+Q P L E
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE 188
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +2
Query: 266 WD--SVSLQPFXKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEXNFP 436
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 437 DYVQQGVKTMGYKEPTPIQAQGWP 508
+ + ++ Y +PTP+Q P
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIP 191
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHI----NNQPPISERVMXPIALVXGAXQRVST 674
QTGSGKT A+ P I I + Q P R + P+A++ + +++
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELAS 251
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 416 FEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
FE N V +K GYK PTPIQ + P
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMP 60
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 420 KXQIFLIMCNKV*RQWVTKNRRPFKLKAGRSYVWKXFSWRTQTGSGKTLAYILPA 584
K ++F C K Q+ + FK++ G + K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 225 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 109
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 404 PIQYFEEXNFPDYVQQGVKTMGYKEPTPIQ 493
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 537 RTQTGSGKTLAYILPAIVHINNQPPISER 623
++ TGSGKTLAY+LP + I P++E+
Sbjct: 153 QSYTGSGKTLAYLLPILSEIG---PLAEK 178
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQ 605
Q+GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 540 TQTGSGKTLAYILPAI 587
+ TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 543 QTGSGKTLAYILPAI 587
+TGSGKTLA+++PA+
Sbjct: 199 RTGSGKTLAFLIPAV 213
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +2
Query: 284 QPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQGVKT 463
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 464 MGYKEPTPIQAQGWP*LCL 520
MG+ T IQA+ P L +
Sbjct: 172 MGFARMTQIQAKAIPPLMM 190
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 543 QTGSGKTLAYILPAI 587
+TGSGKTLA+++PA+
Sbjct: 134 RTGSGKTLAFLIPAV 148
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 2 GTRRXVVKVDPA---SERIHSLNKHLQLNPK 85
GT+R ++++ S IHSLNK L LNP+
Sbjct: 774 GTQRLYIRLNTLHFLSSHIHSLNKTLSLNPR 804
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +2
Query: 2 GTRRXVVKVDPA---SERIHSLNKHLQLNPK 85
GT+R ++++ S ++HSLNK L LNP+
Sbjct: 771 GTQRLYIRLNTLHFLSSQLHSLNKSLSLNPR 801
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 106 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKXSLEGRT 252
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At3g62760.1 68416.m07050 glutathione S-transferase, putative
Glutathione transferase III(b) - Zea mays, EMBL:AJ010296
Length = 219
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 100 VTGIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKXSLEGRTWT 258
++ +I VVP E+ N+AI+ L + L+ E +GK L G T+T
Sbjct: 112 ISAVIHQLIVVPLQGESPNAAIVEENLENLGKILDVYEERLGKTKYLAGDTYT 164
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 374 VTVSGVEVHNPIQYFEEXNFPDYVQQGVKTMGYKEPTPIQAQGWP 508
+ SG V P+ F E + + + ++ Y +PTP+Q P
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIP 178
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 296 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQ 451
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 296 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEXNFPDYVQQ 451
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 257 RPDWDSVS--LQPFXKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHN 403
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQP 608
TGSGKTL+Y LP + + ++P
Sbjct: 71 TGSGKTLSYALPIVQLLASRP 91
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 543 QTGSGKTLAYILPAIVHINNQ 605
+TGSGKTLA+++P + ++ +
Sbjct: 116 RTGSGKTLAFVIPILEKLHRE 136
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 546 TGSGKTLAYILPAIVHINNQ---PPISERVMXPI 638
TGSGKTLA+++P + + PP +VM I
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVI 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,576
Number of Sequences: 28952
Number of extensions: 240551
Number of successful extensions: 674
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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