Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060754.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   7.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.1  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 412 ENPAGTSSRRHTVSGAQEPPCAA--SPPDQQPSTVTP 516
           E    T+ R  TVS  + PP  A  +P ++   +V P
Sbjct: 439 EKSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSVAP 475


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = +1

Query: 361 VAVAGTHPVNRTALHPRENPAGTSSRRHTVSGAQEPPCAASPPDQQPS--TVTPHPAP 528
           +AV        T L    NP     R +  S A+     +  PD   S  + TP P P
Sbjct: 176 IAVTAYQNEKITKLKINYNPFAKGFRENGKSSAKRKQLVSEHPDSPNSKKSATPSPPP 233


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 388 NRTALHPRENPAGTSSRRHTVSGAQEPPCAASPPDQQPSTVTPHPAPDSPY 540
           NR + +P + P   S           PP   +PPD      TP+ AP   Y
Sbjct: 263 NRASPYPMQRPKSAS--------LSPPPHVYNPPDHIQQA-TPYSAPGPTY 304


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
 Frame = +2

Query: 320 RLHETHGTAQCAPKSP-SPVPILLIGRHSIPGKIP---QERRLGDTP*AVHRSHLAPPHH 487
           +L     T    P S  SP P         PG +P     R + + P  ++   L  P+ 
Sbjct: 27  KLEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDP--LNCRDL--PNS 82

Query: 488 RTNSRVXSPRTRHPTAPTGD 547
           R NSR  S     P  P+G+
Sbjct: 83  RCNSRESSDSLVQPRCPSGE 102


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 159 ITRSVTPLDRVSVNGFPSVKKKKKGF 82
           ++ ++  LD++  NGF +V + +K F
Sbjct: 203 VSDTLRNLDKIVTNGFRNVAESRKIF 228


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 401 SIPGKIPQERRLGDTP 448
           ++PG +P   R GDTP
Sbjct: 396 ALPGYVPVYIRPGDTP 411


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 401 SIPGKIPQERRLGDTP 448
           ++PG +P   R GDTP
Sbjct: 221 ALPGYVPVYIRPGDTP 236


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +1

Query: 409 RENPAGTSSRRHTVSGAQEPPCAASPPDQQPSTVTPHPAPDSPYGR*T 552
           + +PA       T +G   P  +ASPP       +P      P G  T
Sbjct: 208 KASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNIT 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,555
Number of Sequences: 336
Number of extensions: 3697
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)