Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060754.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.4  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   5.8  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.8  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   7.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 463 EPPCAASPPDQQPSTVTPHPAPDSP 537
           +PP AA+P    PS   P P P  P
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +2

Query: 275 PAERLPTKPYQAPPLRLHETHGTAQCAPKS-PSPV-PILL---IGRHSIPGKIPQERRLG 439
           P ER+P+    APP     ++GT    P S P P+ P+ +   I   S P   P   R+ 
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVS 300

Query: 440 DTP*AVHRSHLAPP 481
               A ++    PP
Sbjct: 301 AAALAANKKRPPPP 314


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +1

Query: 388 NRTALHPRENPAGTSSRRHTVSGAQEPPCAASPPDQQPSTVTPHPAPDSP 537
           +  A  P E PA TSS     + A   P A   P    ++      PD P
Sbjct: 95  DEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEP 144


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 490 DQQPSTVTPHPAPDSPYG 543
           D QP    P P+P SP+G
Sbjct: 48  DTQPKEEKPEPSPSSPFG 65


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 449 TVCLRDDVPAGFSRGWSAVLLTG 381
           T+C+ D  P   SR W A  + G
Sbjct: 171 TICINDRAPLSTSRKWGAYYIMG 193


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 177 EAPESDITRSVTPLDRVSV-NGFPSVKKKKKGFF 79
           E  + D++    P  + S+   FP ++K+ KGFF
Sbjct: 171 EQEDDDVSNKSLPHAQQSIIRSFPDIQKQPKGFF 204


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +1

Query: 394 TALHPRENPAGTSSRRHTVSGAQEPPCAASPPDQQPSTVTPHPAPDSP 537
           TA   R + + T S   +      P   +SP     S VTP   P+ P
Sbjct: 173 TASQRRMSDSSTPSTTKSKEKIFSPKALSSPTQGASSNVTPESPPEKP 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,155
Number of Sequences: 5004
Number of extensions: 54331
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)