Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060754.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 458 HRSHLAPPHHR 490
           H SH A PHH+
Sbjct: 433 HHSHAATPHHQ 443


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 396 GTPSPGKSRRNVVSETHRERCTGATLRRLTTGPTAEYXHPAP 521
           G+P P K  R+  + T    C+G T+R  T GP   +    P
Sbjct: 276 GSP-PVKQHRSSSAST---TCSGHTVRCFTGGPRKSHESQCP 313


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 308  APPLRLHETHGTAQCAPKSPSPVPILLIGRHS 403
            A  LRL   H    C  ++ +P P++L   H+
Sbjct: 1092 AAGLRLCLHHRDLPCVLRASTPAPVVLEAVHA 1123


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 510 HPAPGTRQPLREMNGSFAPVPPTSAFFAVKPKRGSHFPFALLQPXGNAMN 659
           H +  TRQ L E+     P PP S   A       +F F  LQ   N  N
Sbjct: 250 HTSLVTRQKLLELGWDVLPHPPYSPDLA----PSDYFLFRSLQNSLNGKN 295


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 393  PINRMGTGDGDFGAHCAVPW 334
            P NR+      FG H   PW
Sbjct: 1308 PTNRVPARITSFGGHVVRPW 1327


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 393  PINRMGTGDGDFGAHCAVPW 334
            P NR+      FG H   PW
Sbjct: 1304 PTNRVPARITSFGGHVVRPW 1323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,061
Number of Sequences: 438
Number of extensions: 4387
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)