Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060753.seq
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 53 3e-08
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.60
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 29 0.80
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 28 1.1
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 28 1.4
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 27 3.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.2
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 4.2
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 5.6
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 7.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.4
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 25 7.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.8
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 9.8
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +1
Query: 247 KGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAG 426
K +ELGLKP A + + AQDP ++ P+ IPK L G++ + +D +EI+EAF+
Sbjct: 266 KVKELGLKPLAKIIGWGEAAQDP-ERFTTSPSLAIPKALKHAGIEASQVDYYEINEAFSV 324
Query: 427 QILANLKAL 453
+AN K L
Sbjct: 325 VAVANTKIL 333
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +2
Query: 95 LVDKDNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSEAKAR 256
LV +D + ++L ++ F K +GTVTAANAS L DGASA + MS AK +
Sbjct: 216 LVTEDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGASALVLMSAAKVK 268
Score = 31.9 bits (69), Expect = 0.085
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 459 EKWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVREDGQFGVISAC 590
E+ N GG +++GHP G CT L ++D + GV + C
Sbjct: 338 ERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVC 381
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.60
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 517 PGGANGCPIESEPPHLFHFSSREPSSSPG 431
P NG P+ S PH H S P+S+ G
Sbjct: 361 PTAVNGLPMNSYTPHSNHLHSPSPNSNSG 389
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 493 IESEPP-HLFHFSSREPSSSPGFVPQRPHGSPTCRYR*P*GRLCPRSWECRRRAPTA-AG 320
+ES+P H ++S +P S VPQ+ PT P P S +P + +G
Sbjct: 330 LESKPGNHQPSYTSEQPMYSTASVPQQISNGPTAVNGLPMNSYTPHSNHLHSPSPNSNSG 389
Query: 319 PRD 311
P D
Sbjct: 390 PTD 392
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.80
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 74 LVDGKDGLVDKDNGIRVS--APEQLAKLKPAFIKPHGT 181
LVDG+D L + D I + P QL P F++ HGT
Sbjct: 39 LVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGHGT 76
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 28.3 bits (60), Expect = 1.1
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Frame = +1
Query: 235 DVRGKGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPK--ILDKVGLKVNDIDTWEI 408
DV G LGLKP+ + A D + ++L A I + +LD + D W
Sbjct: 21 DVHGSYNGLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEEGLLDLGYEYIVMDDCWSK 80
Query: 409 HE--AFAGQILANLKALDSRSGTSGAARSLSDIHSRHRVSSGDAHGSPGWCGRTGSLESS 582
HE A G++ AN +G A+ L D+ + + S + G G GSL
Sbjct: 81 HERNATTGRLEANPDKFP--NGIGSMAKKLHDMGFKFGMYS--SAGKYTCAGFPGSLNHE 136
Query: 583 RPAAR--EDXGVAMLLERHPDCHHPNK 657
+ A D GV L ++ +C + K
Sbjct: 137 QIDADTFADWGVDYL--KYDNCFNEGK 161
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = +2
Query: 293 SHTSL-RIPWTSCCWGP 340
SHT L RIP TSC W P
Sbjct: 244 SHTGLSRIPVTSCAWNP 260
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/51 (41%), Positives = 23/51 (45%)
Frame = -3
Query: 562 SSRTSPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPH 410
S R SP S VH KP NG + SR PSSSP +P PH
Sbjct: 163 SFRRSPPSSVHM--KPSAFNGRKV-----------SRRPSSSPPPIPSIPH 200
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 465 TSRVESLQVRQDLSRKGLMDLPRVDIVDLEADFVQDLGN 349
TS + + R D + +MDL D+ D E F++++GN
Sbjct: 688 TSDMSMCEKRIDQVLQRVMDLRVPDLSDKEKQFIKEIGN 726
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 440 FARICPAKASWISHVSISLTLRPTLSKILGMP 345
FA++ + W+S S S T+RP+ S+ L P
Sbjct: 1276 FAKLSKKQPEWVSFNSFSGTVRPSNSEKLQRP 1307
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 65 NASRFCVSSLRRGHAN 18
+ASRFCV SL+R AN
Sbjct: 579 SASRFCVESLKRQKAN 594
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 334 GPAYGIPKILDKVGLKVNDIDTWEIHEAF 420
G +P++L + D+DTWE+ E F
Sbjct: 686 GLVENVPRMLPSHLNAIIDVDTWEVPEVF 714
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 280 YLRDFTYVAQDPVDQLLLGPAYGIPKILD-KVGLKVNDIDTWEIHEAFAGQILANLKALD 456
++ F Y+ +D V QLL+ A+G+ + D K G + ++ IL L++LD
Sbjct: 817 HIHQFLYIGKDAVPQLLI-DAFGVNSLADLKAGRFTMPVIDNPLNVRI-NAILGKLRSLD 874
Query: 457 SRS 465
S
Sbjct: 875 KGS 877
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 191 ANASFLTDGASACLXMSEAKARSSASNRRPTCGTSHTSLRIPWTSCCWGPPTAFPRS--- 361
+++SF + +S+ S SS+S+ RP +SH+S S ++ P S
Sbjct: 364 SSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAF 423
Query: 362 -WTKSASRSTISTRGRSMRPLRDK 430
++SRS+ + S+ L K
Sbjct: 424 YHNSTSSRSSSHSSSHSLSSLSSK 447
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 635 GCLSSSMATPXSSRAA-GRDDSKLPVLPHQPGEPCASPDETRWREWMSDRE 486
G S + P S ++ G DD + P P C+SP ++ R + SD +
Sbjct: 59 GNSDSDLLEPPSEHSSNGEDDKDINNPPSMPSSVCSSP-KSPHRHYESDED 108
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 577 TPNCPSSRTSPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPT 398
+P S +S +S + T P + P S P S +SP + P P SPT
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 280 YLRDFTYVAQDPVDQLLLGPAYGIPKI 360
YL D+T+ DP + A+ +PK+
Sbjct: 230 YLYDYTFYFSDPSPKKYAADAFSLPKL 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,986
Number of Sequences: 5004
Number of extensions: 50623
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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