Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060753.seq
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 54 1e-07
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 51 1e-06
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 47 1e-05
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 46 3e-05
09_04_0180 + 15367737-15367755,15368874-15369739 35 0.067
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477... 34 0.12
12_01_0374 - 2910752-2911516 31 0.62
11_06_0610 - 25449085-25453284 31 1.1
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 2.5
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.5
10_08_1055 + 22587122-22587501,22587578-22588097 29 3.3
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 29 3.3
02_04_0143 + 20172128-20172355,20172452-20173174 29 3.3
01_01_0599 - 4448290-4448790 29 3.3
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191 29 3.3
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 29 4.4
08_01_0123 + 974941-975186,975274-977505 28 5.8
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243... 28 5.8
06_01_0783 + 5857950-5857979,5859474-5860424 28 5.8
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 28 5.8
10_06_0049 - 10063273-10063665 28 7.7
07_03_1608 - 28125301-28126063,28127030-28127139,28127222-281277... 28 7.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 7.7
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 28 7.7
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 28 7.7
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 7.7
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 7.7
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 28 7.7
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 38/54 (70%)
Frame = +2
Query: 95 LVDKDNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSEAKAR 256
LVDKD G+ P +L KL+P+F + GTVTA NAS ++DGA+A + +S KA+
Sbjct: 221 LVDKDEGLDKFDPVKLKKLRPSFKENGGTVTAGNASSISDGAAALVLVSGQKAQ 274
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +1
Query: 247 KGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAG 426
K QELGL+ A ++ F AQ P + PA IPK L GL+ + +D +EI+EAF+
Sbjct: 272 KAQELGLQVIARIKGFADAAQAP-ELFTTSPALAIPKALANAGLESSRVDYYEINEAFSA 330
Query: 427 QILANLKAL 453
LAN K L
Sbjct: 331 VALANQKLL 339
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 438 ELEGSRLEKWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVREDGQFGVISAC 590
+L G EK N GG++S+GHP G T L L + G+ GV C
Sbjct: 337 KLLGIPSEKINVHGGAVSLGHPLGCSGARILVTLLGVLREKGGKIGVAGVC 387
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +1
Query: 247 KGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAG 426
K + LGL+ A +R + AQ P + PA IPK + GL+ + ID +EI+EAF+
Sbjct: 263 KAKSLGLQVIARIRGYADAAQAP-ELFTTTPALAIPKAVSNAGLQTSQIDYYEINEAFSV 321
Query: 427 QILANLKALDSRSG 468
LAN K L SG
Sbjct: 322 VALANQKLLGIPSG 335
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 462 KWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVREDGQFGVISAC 590
K N GG +S+GHP G T L L ++G+ GV C
Sbjct: 336 KLNLSGGGVSLGHPIGCSGARIIVTLLGILRHKNGKIGVAGVC 378
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 241 RGKGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAF 420
R + GL R F V DP + +GPA IP + GL++ DID +E++EAF
Sbjct: 303 RDVAMKKGLPILGVFRSFAAVGVDPA-VMGVGPAVAIPAAVKSAGLQIEDIDLFELNEAF 361
Query: 421 AGQIL--ANLKALD-SRSGTSGAARSL 492
A Q + N LD S+ +G A +L
Sbjct: 362 ASQFVYCCNKLGLDRSKVNVNGGAIAL 388
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = +2
Query: 50 KIVKRSTFLVDGKDG-----LVDKDNGIRVSAPEQ-LAKLKPAFIKPHGTVTAANASFLT 211
+IV T +VD K G ++ D+GIR LAKLKP F K GT TA N+S ++
Sbjct: 234 EIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGLAKLKPVFRKD-GTTTAGNSSQVS 292
Query: 212 DGASACLXM 238
DGA A L M
Sbjct: 293 DGAGAVLLM 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 462 KWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVR--EDGQFGVISAC 590
K N GG++++GHP G T L + R D +FGV++ C
Sbjct: 378 KVNVNGGAIALGHPLGATGARCVATLLNEMKRRGRDCRFGVVTMC 422
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +2
Query: 38 RMTRKIVKRSTFLVDGKDG-----LVDKDNGIRVSAP-EQLAKLKPAFIKPHGTVTAANA 199
+ +IV T +VD K G +V D+GIR L+KLKPAF K GT TA NA
Sbjct: 232 KFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLSKLKPAFSKD-GTTTAGNA 290
Query: 200 SFLTDGASACLXM 238
S ++DGA A L M
Sbjct: 291 SQVSDGAGAVLLM 303
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +1
Query: 241 RGKGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAF 420
R + GL R F V DP + +GPA IP + GL+++D+D +EI+EAF
Sbjct: 305 RDIAMQKGLPIVGVFRSFAAVGVDPAI-MGVGPAVAIPAAVKAAGLQIDDVDLFEINEAF 363
Query: 421 AGQILANLKAL 453
A Q + K L
Sbjct: 364 ASQYVYCCKKL 374
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 462 KWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVR--EDGQFGVISAC 590
K N GG++++GHP G T L + R +D +FGVIS C
Sbjct: 380 KVNVNGGAMALGHPLGATGARSVSTLLNEMKRRGKDCRFGVISMC 424
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 34.7 bits (76), Expect = 0.067
Identities = 26/87 (29%), Positives = 33/87 (37%)
Frame = -3
Query: 583 EMTPNCPSSRTSPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGS 404
E+ P P R P+ + +P P P L EP P P P
Sbjct: 126 ELEPEPPPPRPMPIPTPSPRPRPPDPEPKPDPEPDPELEPEPEPEPDPEPEPEPPTPKPI 185
Query: 403 PTCRYR*P*GRLCPRSWECRRRAPTAA 323
PT P RL PRS+ +R +PT A
Sbjct: 186 PT-PIPSPPPRLIPRSFLAKRLSPTGA 211
>05_01_0546 -
4769565-4769612,4769873-4770037,4770192-4770200,
4770412-4770680,4772931-4772994
Length = 184
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 530 SPDETRWREWMSDRERAAPLVPL-LESRAF-KFARICPAKASWISHVSISLTLRPTLSK 360
+P E +W++W R + L+PL R+ KF ++ P + W H +++ R SK
Sbjct: 41 APGEHQWQQWRRTRMQPMLLLPLRARPRSINKFKQVLPQRQEWREHAALNSLRREIESK 99
>12_01_0374 - 2910752-2911516
Length = 254
Score = 31.5 bits (68), Expect = 0.62
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 10/156 (6%)
Frame = +2
Query: 95 LVDKDNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSEAKARSSASNR 274
+VD G R P QL P+F++P S T S+ S A S +S+
Sbjct: 32 VVDTGCGCRPRRPRQLLMSLPSFLRPSALKPPVPRS--TSSHSSSFFPSSASTASFSSSS 89
Query: 275 RPTCGTSHTSL----RIPW----TSCCWGPPTAFPRSWTKSASRSTISTRGRS--MRPLR 424
T T+++S + P+ + P T + KS+S S+ S+ + RP R
Sbjct: 90 AATYTTTYSSSSATNQYPYYGKAAAAAAAPVTVTTNNHGKSSSSSSSSSAAAAARRRPSR 149
Query: 425 DKSWRT*RLSTREVEQVGRLALYRTSIRATGFRLAM 532
K + + E E VG +S FR +M
Sbjct: 150 KKRYEK-MAAAEEEEDVGVAVEKESSDPRADFRESM 184
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -3
Query: 586 AEMTPNCPSSRTSPVSRVHRQTKPGGANGCP----IESEPPHLFHFSSREPSSSPGFVPQ 419
+E +P P+ +SP + + P G G P S PP H SS P S P+
Sbjct: 802 SEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPE 861
Query: 418 RPHGSP 401
SP
Sbjct: 862 AHVSSP 867
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 239 SEAKARSSASNRRPTCGTSHTSLRIPWTSCCWGPPTAFPRSWTKSASRSTISTRGRS 409
S + RS +RR G+ S R S W + RSW++S SRS +R RS
Sbjct: 1219 SPDRGRSRGYDRRS--GSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRS 1273
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 2.5
Identities = 33/89 (37%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +2
Query: 116 IRVSAPEQLAKLKPA--FIKPHG-TV--TAANASFLTDGASACLXMSEAKARSSASNRRP 280
+RVS P A PA P G TV T A SF GAS+ S A R+S +
Sbjct: 584 LRVSVPHPRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASS----SSAAPRASTAPLAL 639
Query: 281 TCGTSHTSLRIPWTSCCWGPPTAFPRSWT 367
H LR P + PP A PR WT
Sbjct: 640 HAPAPH--LRAPPVAT---PPPAAPRGWT 663
>10_08_1055 + 22587122-22587501,22587578-22588097
Length = 299
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 372 RPQGQRYRHVGDP*GLCGTNPGELEGSRLEKWNKWGGSLSIGHPFAPPGFVWRCTRLTG 548
R + Q + V P G G GE+ S L W K+G G P+ P G+ +RC+ G
Sbjct: 126 RRKSQTKKVVCIPAGASGGGGGEVVPSDLWAWRKYGQKPIKGSPY-PRGY-YRCSSSKG 182
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 538 RVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRP 413
R+H+ + + P + P F + P + GF PQRP
Sbjct: 864 RMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRP 905
>02_04_0143 + 20172128-20172355,20172452-20173174
Length = 316
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 448 ALDSRSGTSGAARSLSDIHSRHRVSSGDAHGSPGWCGRTGSLESSRPAAREDXGVA 615
A++ +G RSLSD+ S G T ++E+ PAA + G+A
Sbjct: 56 AVEGEPAEAGRRRSLSDLLKEDAESEGSEAAPAPSAEATKAVETESPAAAAESGIA 111
>01_01_0599 - 4448290-4448790
Length = 166
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 244 GKGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDI 393
GK G +AY+RD +A P D L AY ++D GLK +DI
Sbjct: 31 GKQGATGGPTRAYVRDARAMAATPADVKDLPGAYAF--VVDMPGLKSSDI 78
>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
Length = 539
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 284 CGTSHTSLRIPWTSCCWGPPTAFPRSWTKSASRSTI 391
CG + PWT C+ T R+ TKS + ST+
Sbjct: 238 CGHRRRAAHEPWTFACFRTVTITARADTKSPASSTV 273
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 566 PVLPHQPGEPCASPDETRWREWM 498
PV PH+PG A P RW W+
Sbjct: 20 PVHPHRPGSLRARPYYRRWTPWI 42
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 665 LGSLLGWWQSGCLSSSMATPXSSRAAGRDDSKLPVLP--HQPGEP 537
LG LL GC S++ + AA + +LP LP H+ EP
Sbjct: 780 LGDLLTSTDFGCRVSTLVVQQQTMAAAGESCRLPELPAKHKSDEP 824
>07_03_0832 -
21823518-21823826,21823920-21824070,21824148-21824385,
21824469-21824679,21824789-21825009,21825590-21825697,
21825813-21826142,21826740-21827050,21828969-21829651
Length = 853
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 398 RGRSMRPLRDKSWRT*RLSTREVEQVGRL 484
RGR+++ + KSWR+ STR + G L
Sbjct: 472 RGRNIKDVMHKSWRSMHTSTRSQQNSGML 500
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 28.3 bits (60), Expect = 5.8
Identities = 30/102 (29%), Positives = 38/102 (37%)
Frame = +1
Query: 247 KGQELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAG 426
KG+ LKP L D VA P + G P+ +VG V D D FA
Sbjct: 119 KGKVRPLKPPPGLLDGGSVASSPRSPMSRGGGMWSPRRRSRVGSGV-DFD------PFAA 171
Query: 427 QILANLKALDSRSGTSGAARSLSDIHSRHRVSSGDAHGSPGW 552
+L KA G A S S + ++ A S GW
Sbjct: 172 ALLEATKAPSPSPSPLGVAASGSPAKKADQFTTRPASKSAGW 213
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -2
Query: 569 LPVLPHQPGEPCASP--DETRWRE 504
LP+LP QP PC P D + RE
Sbjct: 54 LPILPRQPAPPCLEPAGDRKKQRE 77
>10_06_0049 - 10063273-10063665
Length = 130
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 577 TPNCPSSRTSPVSRVHRQTKPGGANGCPIES 485
TPNCP + P H K GG CP+++
Sbjct: 25 TPNCPGEQVVPTPTHH--GKNGGHGRCPMDA 53
>07_03_1608 -
28125301-28126063,28127030-28127139,28127222-28127716,
28127797-28128000
Length = 523
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 23 HGPCARMTRKIVKRSTFLVDGKDGLVDKDNGIRVSAPEQ-LAKLKPAFIKPHGTVTAANA 199
+ P A+M + + T +V G D ++K + I S+P+Q L ++K A + + NA
Sbjct: 387 YSPVAKMFAR--RGCTVIVPGMDVCMNKQHRITGSSPDQLLVQIKNACRRHGARIAGENA 444
Query: 200 SFLTDGASA 226
S + S+
Sbjct: 445 SLVVTHTSS 453
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -3
Query: 448 PSSSPGF-VPQRPHGSPTCRYR*P*GRLCPR---SWECRRRAPTAAGPRDPERRM*SPAG 281
PS PG + +R P R R P L PR RRR+P P RRM SP
Sbjct: 304 PSRRPGSPIRRRSPSPPPRRLRSP-RHLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPR 362
Query: 280 RP 275
RP
Sbjct: 363 RP 364
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 514 GGANGCPIESEPPHLFHFSSREPSSSPGFVP 422
GG++ CP+ S P L SS PS PG +P
Sbjct: 709 GGSSSCPVASGPEQLPR-SSSCPSIGPGGLP 738
>03_02_0569 -
9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 477 PTCSTSRVESLQVRQDLSRKGLMDLPRVDI 388
P +T RV S++ RQD L DLP+VDI
Sbjct: 733 PLVATERVPSIK-RQDSFEMKLPDLPKVDI 761
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 529 RQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPT 398
R P A P +S P+ S P +SPG PHG P+
Sbjct: 1631 RVMNPNAAEFVPGQSRSPNGNPASPNGPLASPGGTEASPHGLPS 1674
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Frame = +1
Query: 439 NLKALDSRSGTSGAARSLSDIHSRHR---------VSSGDAHGSPGWCGRTGSLESSRPA 591
N L SRSG++ AA + D SRHR +S + SP + L S+RPA
Sbjct: 993 NAAQLTSRSGSTVAAHEIFDGRSRHRPGLDKRLSSISPNTLNASPQAAKKRLRLRSTRPA 1052
>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 516 PVARMDVR*RASRPTCSTSRVESLQVR 436
P+ D R R S P C T +++SLQVR
Sbjct: 1127 PLVIEDCRPRESWPWCGTIQIDSLQVR 1153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,430,247
Number of Sequences: 37544
Number of extensions: 454245
Number of successful extensions: 1895
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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