Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060753.seq
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 109 2e-24
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 49 3e-06
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 47 1e-05
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 38 0.008
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacti... 29 3.9
Z81474-6|CAH04697.1| 320|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81474-3|CAB03903.3| 298|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 5.2
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 6.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 6.8
CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical ... 28 6.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 27 9.1
AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical... 27 9.1
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 109 bits (262), Expect = 2e-24
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1
Query: 262 GLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAGQILAN 441
G KPKAYLRD+ YVAQDP DQLLL PAY IPK+LDK GL + D+D +EIHEAFAGQ+LAN
Sbjct: 304 GYKPKAYLRDYLYVAQDPKDQLLLSPAYVIPKLLDKAGLTLKDVDVFEIHEAFAGQVLAN 363
Query: 442 LKALDS 459
L A+DS
Sbjct: 364 LNAMDS 369
Score = 81.8 bits (193), Expect = 4e-16
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +2
Query: 71 FLVDGKDGLVDKDNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSEAK 250
FL K + +DNGIRVS E+L+ LKPAF+KPHGTVTAANAS+LTDGASA L M+E
Sbjct: 240 FLDGKKPKTIKEDNGIRVSTLEKLSSLKPAFVKPHGTVTAANASYLTDGASAALIMTEEY 299
Query: 251 A 253
A
Sbjct: 300 A 300
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +3
Query: 456 LEKWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVREDGQFGVISAC 590
++K N WGGSLSIGHPF G L E GQ+ VI+AC
Sbjct: 388 MDKLNLWGGSLSIGHPFGATGVRLATHSAHRLKEEKGQYAVIAAC 432
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 265 LKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAGQILA 438
LKP A + ++ V DP + +GPA I ++L K GLK+ DID +E++EAFA Q LA
Sbjct: 271 LKPLARVVAYSAVGCDPTI-MGIGPAPAIREVLKKSGLKIGDIDIFEVNEAFAPQALA 327
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 107 DNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSEAKARS 259
D R + E LAKLKP F K G V A NAS ++DGA+A + E +S
Sbjct: 219 DEHPRATTAESLAKLKPVFQKD-GLVNAGNASGISDGAAALVVAGEDSVKS 268
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 447 GSRLEKWNKWGGSLSIGHPFAPPGFVWRCTRLTGLVREDGQFGVISAC 590
G +EK N GG++++GHP A G + L R + ++G+ SAC
Sbjct: 333 GIPMEKLNVNGGAIALGHPLAASGARISTHIVHELHRRNVKYGIGSAC 380
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +1
Query: 256 ELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAGQIL 435
E LKP A + + A P+D + P PKIL++ G+K +D+ WE++EAF+ L
Sbjct: 283 EQSLKPLARILAYGDAATHPLD-FAVAPTLMFPKILERAGVKQSDVAQWEVNEAFSCVPL 341
Query: 436 ANLKAL 453
A +K L
Sbjct: 342 AFIKKL 347
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 95 LVDKDNGIRVSAPEQLAKLKPAFIKPHGTVTAANASFLTDGASACLXMSE 244
+VDKD ++ L+ F K GT+TAANAS L DGA+A + S+
Sbjct: 230 IVDKDEEFTKVNFDKFTSLRTVFQKD-GTITAANASTLNDGAAAVIVASQ 278
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 468 NKWGGSLSIGHPFAPPGFVWRCTRLTGLVR--EDGQFGVISAC 590
N GG++SIGHP G +T LV + GQ GV + C
Sbjct: 355 NPHGGAVSIGHPIGMSG----ARLITHLVHTLKSGQIGVAAIC 393
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = +1
Query: 262 GLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAGQILAN 441
G P A L F + P+D + P + +L K GL+V+DI WE++EAFA +LA
Sbjct: 268 GAHPLAELVAFAEAGRAPID-FTVAPVDAVRLLLKKSGLQVSDIALWELNEAFAVTVLAF 326
Query: 442 LKALD 456
+K L+
Sbjct: 327 IKELN 331
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 LVDKDNGIRVSAPEQLAKLKPAFIKPH-GTVTAANASFLTDGASACLXMSE 244
++ +D + +++ LKP F++ GT+T ANAS L DGA A + + E
Sbjct: 212 VITEDEEYKKLIESKVSSLKPVFVRDGTGTITPANASSLNDGAVATVVVGE 262
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 256 ELGLKPKAYLRDFTYVAQDPVDQLLLGPAYGIPKILDKVGLKVNDIDTWEIHEAFAGQIL 435
E LKP A + + A +D + P P +L G++ +D+ WE++EAF+ L
Sbjct: 336 EQNLKPLARILAYGDAATHQLD-FAVAPTLLFPNLLQSAGVEQSDVAQWEVNEAFSCVPL 394
Query: 436 ANLKAL 453
A +K L
Sbjct: 395 AFIKKL 400
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 468 NKWGGSLSIGHPFAPPGFVWRCTRLTGLVR--EDGQFGVISAC 590
N GG++SIGHP G + +T LV E GQ GV + C
Sbjct: 408 NPHGGAVSIGHPIGMSG----ASLITHLVHTLESGQIGVAALC 446
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 444 EGSRLEKWNKWGGSLSIGHPFAPPG 518
EGSR+++W WGG G+ PG
Sbjct: 49 EGSRVKRWGGWGGGYPGGYGGGYPG 73
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 28.7 bits (61), Expect = 3.9
Identities = 31/116 (26%), Positives = 51/116 (43%)
Frame = -2
Query: 629 LSSSMATPXSSRAAGRDDSKLPVLPHQPGEPCASPDETRWREWMSDRERAAPLVPLLESR 450
+SS+++T + + GR + QP E A P E + ER P S
Sbjct: 550 VSSTVSTARNGPSTGRRTESTAIEIEQPIE--AVPPEVVAAAVLPPEERPGPST---NSN 604
Query: 449 AFKFARICPAKASWISHVSISLTLRPTLSKILGMP*AGPNSSWSTGS*ATYVKSRR 282
A + + +S S SIS+ P++ + + A P+S ST S AT + S++
Sbjct: 605 VSIEASVEKSPSSSTSRRSISIRSSPSIHTVSAISTAAPDSRPSTAS-ATSIISKK 659
>AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacting
protein protein10, isoform b protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 288 GLHIRRSGSRGPAAVGARLRHSQDLGQSRPQGQRYRHVGDP 410
G H+R S ++ R+R QD+ +RP R+ DP
Sbjct: 367 GKHVRDSNPISLESINRRIRTLQDIRANRPVTSRFTEYRDP 407
>Z81474-6|CAH04697.1| 320|Caenorhabditis elegans Hypothetical
protein C18D4.6c protein.
Length = 320
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 279 LPAGLHIRRSGSRGPAAVGARLRHSQDLGQSR 374
L G H + +RGPA VG RH++ G +R
Sbjct: 209 LLGGAHPGQFRARGPAGVGVVSRHTRQFGAAR 240
>Z81474-3|CAB03903.3| 298|Caenorhabditis elegans Hypothetical
protein C18D4.6a protein.
Length = 298
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 279 LPAGLHIRRSGSRGPAAVGARLRHSQDLGQSR 374
L G H + +RGPA VG RH++ G +R
Sbjct: 209 LLGGAHPGQFRARGPAGVGVVSRHTRQFGAAR 240
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Frame = +2
Query: 152 KPAFIKPHGTVTAANASFLTDGASACLXMSEAKARSSASNRRPTCGTSH---TSLRIPWT 322
KP P T T S + S S + S PT TS T+ T
Sbjct: 259 KPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTT 318
Query: 323 SCCWGPPTAFPRSWTKSASRSTIST 397
PT + T SAS +TIST
Sbjct: 319 PSTTSTPTTTSTTTTTSASTTTIST 343
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 565 PSSRT-SPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPT 398
P+S T SP S + T P +G P S +SP + P P SPT
Sbjct: 1691 PTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPT 1747
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 565 PSSRT-SPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPT 398
P+S T SP S + T P +G P S +SP + P P SPT
Sbjct: 1698 PTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPT 1754
>CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical
protein C42C1.9 protein.
Length = 252
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 173 HGTVTAANASFLTDGASACLXMSEAKARSSASNR 274
HG VT N + D S CL S + AR S++
Sbjct: 136 HGAVTLENIFLMKDEPSFCLLTSRSHARKMESDK 169
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 9.1
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Frame = -3
Query: 565 PSSRTSPVSRVHRQTKPGGANGCPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPTCRYR 386
PS SP + R+ P P S+ P + S P P+R +
Sbjct: 394 PSKSRSPAPK--REIPPARRRRSPSASKSPPAPKRAKSRSKSPPA--PRRRRSPSQSKSP 449
Query: 385 *P*GRLCP-RSWEC--RRRAPTAAGPRDPERRM*SPAGRP 275
P R P +S + RRR+P+ + R P RR SPA P
Sbjct: 450 APRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRR-SPAAAP 488
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 299 TSLRIPWTSCCWGPPTAFPRSWTKSASRSTISTRGRSMRPLRDK 430
TS++ P TSC PP S S +++T +T+ M P+ K
Sbjct: 878 TSVQAPPTSCSAAPPVDDLLSEILSGAKTTKTTKTTKMPPVDQK 921
>AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical
protein Y43F8C.13 protein.
Length = 338
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 499 CPIESEPPHLFHFSSREPSSSPGFVPQRPHGSPTCRY 389
CPI P F+F S+ +S F +G+P Y
Sbjct: 195 CPITIVPWEAFYFESKTHDASVDFSAHLKYGTPLANY 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,595
Number of Sequences: 27780
Number of extensions: 314429
Number of successful extensions: 1026
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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