Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060751.seq
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    28   0.83 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   4.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   5.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   7.8  

>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 184 GNTKLPSNKXVLVLGDNXTGKTSL 255
           G+ K P  + +++LGD   GKTSL
Sbjct: 6   GSKKKPIYRKIVILGDGAAGKTSL 29


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 76  RMDTNGQANGLKSKKKENGDGKDN 147
           R DT G    LKS K   G GKD+
Sbjct: 21  RSDTQGSIKSLKSLKTVLGKGKDS 44


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 85  TNGQANGLKSKKKENGDGKDNLWSAILEEVQXQGNTK 195
           T+ Q    KS    NGD   +LWS+ + +V  + +T+
Sbjct: 416 TSQQPTAAKSSGS-NGDAFGSLWSSAVNKVHQENSTR 451


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 354 AECDHRDIHLXHLYTHXRVQTPS 286
           +E  +RD +L  +Y H R+  PS
Sbjct: 29  SEGQYRDFNLPSVYDHARIDNPS 51


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 272 TLQVCHRLVFPVSLSPSTKTXL 207
           T+Q+C+++ FP+SL  S K  +
Sbjct: 565 TMQLCYKVPFPLSLILSRKAII 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,258
Number of Sequences: 5004
Number of extensions: 27974
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)