Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060751.seq
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0252 - 1914060-1914142,1914243-1914345,1914516-1914599,191...    29   1.4  
05_01_0143 - 944169-947273                                             28   4.4  
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833...    28   4.4  

>05_01_0252 -
           1914060-1914142,1914243-1914345,1914516-1914599,
           1914687-1914782,1914859-1914909,1915001-1915141,
           1915221-1915277,1915396-1915470,1915556-1915828,
           1915935-1915994,1916109-1916201,1916281-1916400
          Length = 411

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 299 CRPLLWVSNTLQVCHRLVFPVSL 231
           CR L ++ NT+ VCHR + P +L
Sbjct: 184 CRALAYIHNTIGVCHRDIKPQNL 206


>05_01_0143 - 944169-947273
          Length = 1034

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 82  DTNGQANGLKSKKKEN---GDGKDNLWSAILEE 171
           D N  ++G    K EN   GDG ++LW + LE+
Sbjct: 474 DDNHSSSGYPETKAENCYRGDGSEDLWYSALED 506


>01_01_1054 +
           8330081-8330137,8330229-8330321,8330445-8330504,
           8330703-8330975,8331107-8331181,8331269-8331325,
           8331409-8331549,8331656-8331706,8331795-8331944,
           8331974-8332057,8332171-8332273,8332451-8332527,
           8333469-8333704,8334000-8334078,8335123-8335218,
           8335735-8335828,8336325-8336423,8336663-8337453
          Length = 871

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 299 CRPLLWVSNTLQVCHRLVFPVSL 231
           CR L ++ N++ VCHR + P +L
Sbjct: 163 CRALAYIHNSIGVCHRDIKPQNL 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,351,875
Number of Sequences: 37544
Number of extensions: 195464
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)