Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060751.seq
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54473| Best HMM Match : DLIC (HMM E-Value=0)                        64   6e-11
SB_5294| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.092
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     30   0.85 
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   2.0  
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        28   3.4  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
          Length = 1401

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +3

Query: 255  VANLQGVGDP-KKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFP 431
            ++ L+G  D   KG  L Y Y++V DE  DD+TRL+VW+LDGDP + +LLK+AL+     
Sbjct: 879  ISKLRGKEDDISKGHGLEYTYLEVHDEEIDDYTRLNVWILDGDPRNKSLLKYALTPKHAR 938

Query: 432  XTLVXLTV 455
              LV + V
Sbjct: 939  DVLVVMVV 946



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 17/36 (47%), Positives = 29/36 (80%)
 Frame = +1

Query: 148 LWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
           LWS+IL +VQ   + KLPS+K ++++G++ +GKT+L
Sbjct: 843 LWSSILSDVQSSASRKLPSHKSIILIGNDESGKTTL 878


>SB_5294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 109 KSKKKENGDGKDNLWSAILEEVQXQGNTKLPSNKXVLVLGD-NXTGKTSLWQTCKVLETQ 285
           K K K+N D K  L+ +I ++ + +GN  + +   +L +       K SL Q   VL T 
Sbjct: 52  KKKNKKNNDDKKWLYKSITKQPELKGNINIDNAATMLNIHTLKNLAKVSLAQVLHVLNTI 111

Query: 286 RRGLHSXMRI 315
            R L   +R+
Sbjct: 112 ERELVQILRV 121


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 106 LKSKKKENGDGKDNLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
           L+S+ ++     D +     E    Q +  L SNK V+VLGD  +GKT+L
Sbjct: 234 LRSELRKTAIAMDAVKEESNEGTALQLHKVLQSNKNVVVLGDAGSGKTTL 283


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 121  KENGDGKDNLWSAIL--EEVQXQGNTKLPSNKXVLVLGDNXTGKTS--LWQTCKVLETQ 285
            +++  G  NL  A+   +++    NT+  S K V+++ DN +GKT   L  T K L  Q
Sbjct: 2324 RQSLSGNSNLEEALTNAKKILNTPNTRKSSRKAVVIITDNTSGKTPTVLKDTAKPLHEQ 2382


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 333 YRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPXTLVXLTVGHDH 467
           + +D  + + ++L+G P   +  +F  S G FP   V L V   H
Sbjct: 255 WHEDPFKKTGFILEGFPSSESEARFLASSGLFPDATVLLAVEDTH 299


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 423  FPH*AQT*VD*CD-LDHHPAPKH*AECDHRDIHLXHLYTHXRVQTPS 286
            + H AQT  + C  L  +    H A+  H   H  H Y H R + PS
Sbjct: 880  YRHRAQTSHEMCHALYTYAYELHRAQTSHEMTHALHTYRHARTRAPS 926


>SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 325 EMNIAMITLGSVFGCWMVIQVTLIYSS 405
           +M+ A+  LG VFGC++ I +   Y+S
Sbjct: 155 QMSFAIGALGIVFGCYLAIWIKAKYAS 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,796
Number of Sequences: 59808
Number of extensions: 224690
Number of successful extensions: 580
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)