Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060751.seq
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC025959-1|AAH25959.1| 492|Homo sapiens dynein, cytoplasmic 1, ... 75 1e-13
AF035812-1|AAB88513.1| 492|Homo sapiens dynein light intermedia... 75 1e-13
BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein pr... 72 1e-12
BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1, ... 72 1e-12
AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A va... 72 1e-12
AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A va... 72 1e-12
>BC025959-1|AAH25959.1| 492|Homo sapiens dynein, cytoplasmic 1,
light intermediate chain 2 protein.
Length = 492
Score = 75.4 bits (177), Expect = 1e-13
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ LQG KKG L Y Y+ V DE RDDHTR +VW+LDGD H LLKFA+S + P
Sbjct: 71 MTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPE 130
Query: 435 TLV 443
TLV
Sbjct: 131 TLV 133
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 88 NGQANGLKSKKKENGDGKDNLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTC 267
NG A + +LWS+IL EV + +KLPS K +LV G++ +GKT+L
Sbjct: 15 NGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKL 74
Query: 268 KVLETQRRG 294
+ E ++G
Sbjct: 75 QGAEHGKKG 83
>AF035812-1|AAB88513.1| 492|Homo sapiens dynein light intermediate
chain 2 protein.
Length = 492
Score = 75.4 bits (177), Expect = 1e-13
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ LQG KKG L Y Y+ V DE RDDHTR +VW+LDGD H LLKFA+S + P
Sbjct: 71 MTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPE 130
Query: 435 TLV 443
TLV
Sbjct: 131 TLV 133
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 88 NGQANGLKSKKKENGDGKDNLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTC 267
NG A + +LWS+IL EV + +KLPS K +LV G++ +GKT+L
Sbjct: 15 NGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKL 74
Query: 268 KVLETQRRG 294
+ E ++G
Sbjct: 75 QGAEHGKKG 83
>BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein
protein.
Length = 335
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ +QG+ + KKG L Y Y++V DE RDD TR +VW+LDGD H LLKF+L +
Sbjct: 58 IRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD 117
Query: 435 TLVXLTV 455
TLV L V
Sbjct: 118 TLVMLVV 124
Score = 53.6 bits (123), Expect = 3e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 130 GDGKD--NLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTCKVLETQRRG 294
GD +D NLWS IL EV + +KLP+ K VL+LG++ GKTSL + + +E ++G
Sbjct: 14 GDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKG 70
>BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1,
light intermediate chain 1 protein.
Length = 523
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ +QG+ + KKG L Y Y++V DE RDD TR +VW+LDGD H LLKF+L +
Sbjct: 84 IRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD 143
Query: 435 TLVXLTV 455
TLV L V
Sbjct: 144 TLVMLVV 150
Score = 53.6 bits (123), Expect = 3e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 130 GDGKD--NLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTCKVLETQRRG 294
GD +D NLWS IL EV + +KLP+ K VL+LG++ GKTSL + + +E ++G
Sbjct: 40 GDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKG 96
>AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ +QG+ + KKG L Y Y++V DE RDD TR +VW+LDGD H LLKF+L +
Sbjct: 84 IRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD 143
Query: 435 TLVXLTV 455
TLV L V
Sbjct: 144 TLVMLVV 150
Score = 53.6 bits (123), Expect = 3e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 130 GDGKD--NLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTCKVLETQRRG 294
GD +D NLWS IL EV + +KLP+ K VL+LG++ GKTSL + + +E ++G
Sbjct: 40 GDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKG 96
>AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 255 VANLQGVGDPKKGSALXYAYIDVRDEYRDDHTRLSVWVLDGDPGHTNLLKFALSEGTFPX 434
+ +QG+ + KKG L Y Y++V DE RDD TR +VW+LDGD H LLKF+L +
Sbjct: 84 IRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKD 143
Query: 435 TLVXLTV 455
TLV L V
Sbjct: 144 TLVMLVV 150
Score = 53.6 bits (123), Expect = 3e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 130 GDGKD--NLWSAILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSLWQTCKVLETQRRG 294
GD +D NLWS IL EV + +KLP+ K VL+LG++ GKTSL + + +E ++G
Sbjct: 40 GDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKG 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,651,745
Number of Sequences: 237096
Number of extensions: 1119569
Number of successful extensions: 1991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1991
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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