Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060751.seq
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 29 1.7
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 29 1.7
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 29 1.7
U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal mem... 29 2.3
U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal mem... 27 6.9
AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical ... 27 6.9
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 27 6.9
Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical p... 27 9.1
Z73422-13|CAA97773.2| 443|Caenorhabditis elegans Hypothetical p... 27 9.1
Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical p... 27 9.1
Z70307-15|CAA94342.2| 443|Caenorhabditis elegans Hypothetical p... 27 9.1
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 196 LPSNKXVLVLGDNXTGKTSL 255
LP NK +L+ GD+ GKTSL
Sbjct: 404 LPRNKTLLITGDSGIGKTSL 423
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 196 LPSNKXVLVLGDNXTGKTSL 255
LP NK +L+ GD+ GKTSL
Sbjct: 432 LPRNKTLLITGDSGIGKTSL 451
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 196 LPSNKXVLVLGDNXTGKTSL 255
LP NK +L+ GD+ GKTSL
Sbjct: 404 LPRNKTLLITGDSGIGKTSL 423
>U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 1 protein.
Length = 665
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 193 KLPSNKXVLVLGDNXTGKTSLWQT 264
++PS + VLV G N GK+SL++T
Sbjct: 468 EVPSGRNVLVCGPNGCGKSSLFRT 491
>U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 2 protein.
Length = 661
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 187 NTKLPSNKXVLVLGDNXTGKTSLWQ 261
N ++PS VLV G N GK+SL++
Sbjct: 462 NFEVPSGTNVLVCGPNGCGKSSLFR 486
>AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical
protein Y61B8B.1 protein.
Length = 325
Score = 27.1 bits (57), Expect = 6.9
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +1
Query: 331 NIAMITLGSVFGCWMVIQVTLIYSSLR 411
++ ++T+G++FGC +++ LI +R
Sbjct: 197 SVVLLTMGAIFGCLVLVNTDLIRLMVR 223
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 196 LPSNKXVLVLGDNXTGKTSL 255
L S+K +L++GD TGKTS+
Sbjct: 273 LKSHKSILLVGDYCTGKTSI 292
>Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 160 ILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
I E+ T V+VLGDN +GK+SL
Sbjct: 31 IWRELLASKKTNTNQGSTVIVLGDNRSGKSSL 62
>Z73422-13|CAA97773.2| 443|Caenorhabditis elegans Hypothetical
protein C39E9.14a protein.
Length = 443
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 160 ILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
I E+ T V+VLGDN +GK+SL
Sbjct: 31 IWRELLASKKTNTNQGSTVIVLGDNRSGKSSL 62
>Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 160 ILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
I E+ T V+VLGDN +GK+SL
Sbjct: 31 IWRELLASKKTNTNQGSTVIVLGDNRSGKSSL 62
>Z70307-15|CAA94342.2| 443|Caenorhabditis elegans Hypothetical
protein C39E9.14a protein.
Length = 443
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 160 ILEEVQXQGNTKLPSNKXVLVLGDNXTGKTSL 255
I E+ T V+VLGDN +GK+SL
Sbjct: 31 IWRELLASKKTNTNQGSTVIVLGDNRSGKSSL 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,481,136
Number of Sequences: 27780
Number of extensions: 163228
Number of successful extensions: 369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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